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Platform GPL17416 Query DataSets for GPL17416
Status Public on Jul 08, 2013
Title [AraGene-1_0-st] Arabidopsis Gene 1.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Arabidopsis thaliana
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description #%create_date=Wed May 1 12:43:31 2013 PDT
#%chip_type=AraGene-1_0-st-v1
#%lib_set_name=AraGene-1_0-st
#%lib_set_version=v1
#%genome-version=tair10
#%genome-version-ucsc=tair10
#%genome-lifted-method=NONE
#%genome-lifted_from-version-ucsc=tair10
#%netaffx-annotation-date=2012-09-15
#%netaffx-annotation-netaffx-build=33
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
#%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
 
Submission date Jul 08, 2013
Last update date Feb 21, 2017
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (697) GSM1219252, GSM1219253, GSM1219254, GSM1219255, GSM1219256, GSM1219257 
Series (56)
GSE50438 Diurnal cycle effect on whole leaf, mesophyll and vasculature: time course
GSE54312 HDG1 transcription factor targets
GSE55436 Genome-wide transcriptome analysis reveals ABA mediated response in Arabidopsis during gold (Aucl4-) treatment
Relations
Alternative to GPL17417 (alternative CDF)
Alternative to GPL21430 (alternative CDF (aragene10st_At_TAIRG version 18))
Alternative to GPL22603 (alternative CDF [aragene10st_At_TAIRG version 19])
Alternative to GPL23011 (alternative CDF [aragene10st_At_TAIRG version 20])

Data table header descriptions
ID
seqname
strand
start
stop
total_probes
gene_assignment
mrna_assignment
GB_ACC GenBank accession number
ORF
SPOT_ID
swissprot
GO_biological_process
GO_cellular_component
GO_molecular_function
protein_domains
crosshyb_type
category

Data table
ID seqname strand start stop total_probes gene_assignment mrna_assignment GB_ACC ORF SPOT_ID swissprot GO_biological_process GO_cellular_component GO_molecular_function protein_domains crosshyb_type category
13334158 chr1 + 3631 5899 28 NM_099983 // NAC001 // NAC domain-containing protein 1 // --- // 839580 /// AT1G01010.1 // NAC001 // NAC domain-containing protein 1 // --- // 839580 /// AF439834 // NAC001 // NAC domain-containing protein 1 // --- // 839580 "NM_099983 // RefSeq // Arabidopsis thaliana NAC domain-containing protein 1 (NAC001) mRNA, complete cds. // chr1 // 100 // 100 // 28 // 28 // 0 /// AT1G01010.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:3631:5899:1 gene:AT1G01010 transcript:AT1G01010.1 // chr1 // 100 // 100 // 28 // 28 // 0 /// AF439834 // GenBank // Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds. // chr1 // 100 // 89 // 25 // 25 // 0 /// At1g01010 // The Institute for Genomic Research // 68414.t00001 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB: AAD17313 GI:4325282 from [Arabidopsis thaliana] // chr1 // 100 // 100 // 28 // 28 // 0" NM_099983 AT1G01010.1 AF439834 // Q0WV96 /// At1g01010 // Q0WV96 "NM_099983 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// NM_099983 // GO:0006888 // ER to Golgi vesicle-mediated transport // inferred from reviewed computational analysis /// NM_099983 // GO:0007275 // multicellular organismal development // inferred from sequence or structural similarity /// NM_099983 // GO:0043090 // amino acid import // inferred from reviewed computational analysis /// AT1G01010.1 // GO:0007275 // multicellular organismal development // inferred from sequence or structural similarity /// AT1G01010.1 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// AT1G01010.1 // GO:0006888 // ER to Golgi vesicle-mediated transport // inferred from reviewed computational analysis /// AT1G01010.1 // GO:0043090 // amino acid import // inferred from reviewed computational analysis /// AF439834 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// AF439834 // GO:0006888 // ER to Golgi vesicle-mediated transport // inferred from reviewed computational analysis /// AF439834 // GO:0007275 // multicellular organismal development // inferred from sequence or structural similarity /// AF439834 // GO:0043090 // amino acid import // inferred from reviewed computational analysis " NM_099983 // GO:0005575 // cellular_component // no biological data available /// AT1G01010.1 // GO:0005575 // cellular_component // no biological data available /// AF439834 // GO:0005575 // cellular_component // no biological data available NM_099983 // GO:0003677 // DNA binding // inferred from electronic annotation /// NM_099983 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01010.1 // GO:0003677 // DNA binding // inferred from electronic annotation /// AT1G01010.1 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AF439834 // GO:0003677 // DNA binding // inferred from electronic annotation /// AF439834 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity AT1G01010.1 // Pfam // IPR003441 // No apical meristem (NAM) protein 1 main
13334167 chr1 + 23146 31227 38 NM_099986 // DCL1 // endoribonuclease Dicer // --- // 839574 /// AT1G01040.1 // DCL1 // endoribonuclease Dicer // --- // 839574 /// NM_001197952 // DCL1 // endoribonuclease Dicer // --- // 839574 /// AT1G01040.2 // DCL1 // endoribonuclease Dicer // --- // 839574 /// AF292940 // DCL1 // endoribonuclease Dicer // --- // 839574 "NM_099986 // RefSeq // Arabidopsis thaliana endoribonuclease Dicer (DCL1) mRNA, complete cds. // chr1 // 100 // 100 // 38 // 38 // 0 /// AT1G01040.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:23146:31227:1 gene:AT1G01040 transcript:AT1G01040.1 // chr1 // 100 // 100 // 38 // 38 // 0 /// NM_001197952 // RefSeq // Arabidopsis thaliana endoribonuclease Dicer (DCL1) mRNA, complete cds. // chr1 // 100 // 95 // 36 // 36 // 0 /// AT1G01040.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:23416:31120:1 gene:AT1G01040 transcript:AT1G01040.2 // chr1 // 100 // 95 // 36 // 36 // 0 /// AF292940 // GenBank // Arabidopsis thaliana short integuments 1 (SIN1) mRNA, complete cds. // chr1 // 100 // 100 // 38 // 38 // 0 /// At1g01040 // The Institute for Genomic Research // 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] // chr1 // 100 // 100 // 38 // 38 // 0" NM_099986 AT1G01040.1 AF292940 // Q9SP32 /// At1g01040 // Q9SP32 NM_099986 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// NM_099986 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// NM_099986 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// NM_099986 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// NM_099986 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// NM_099986 // GO:0006396 // RNA processing // inferred from electronic annotation /// NM_099986 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// NM_099986 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// NM_099986 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// NM_099986 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// NM_099986 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// NM_099986 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// NM_099986 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// NM_099986 // GO:0009908 // flower development // traceable author statement /// NM_099986 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// NM_099986 // GO:0010098 // suspensor development // inferred from mutant phenotype /// NM_099986 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// NM_099986 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// NM_099986 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// NM_099986 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// NM_099986 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// NM_099986 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// NM_099986 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// NM_099986 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// NM_099986 // GO:0031053 // primary miRNA processing // traceable author statement /// NM_099986 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// NM_099986 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// NM_099986 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// NM_099986 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// NM_099986 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype /// AT1G01040.1 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// AT1G01040.1 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// AT1G01040.1 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// AT1G01040.1 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// AT1G01040.1 // GO:0009908 // flower development // traceable author statement /// AT1G01040.1 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// AT1G01040.1 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// AT1G01040.1 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// AT1G01040.1 // GO:0010098 // suspensor development // inferred from mutant phenotype /// AT1G01040.1 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// AT1G01040.1 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// AT1G01040.1 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// AT1G01040.1 // GO:0031053 // primary miRNA processing // traceable author statement /// AT1G01040.1 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0006396 // RNA processing // inferred from electronic annotation /// AT1G01040.1 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// AT1G01040.1 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype /// NM_001197952 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// NM_001197952 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// NM_001197952 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// NM_001197952 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// NM_001197952 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// NM_001197952 // GO:0006396 // RNA processing // inferred from electronic annotation /// NM_001197952 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// NM_001197952 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// NM_001197952 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// NM_001197952 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// NM_001197952 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// NM_001197952 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// NM_001197952 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// NM_001197952 // GO:0009908 // flower development // traceable author statement /// NM_001197952 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// NM_001197952 // GO:0010098 // suspensor development // inferred from mutant phenotype /// NM_001197952 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// NM_001197952 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// NM_001197952 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// NM_001197952 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// NM_001197952 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// NM_001197952 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// NM_001197952 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// NM_001197952 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// NM_001197952 // GO:0031053 // primary miRNA processing // traceable author statement /// NM_001197952 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// NM_001197952 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// NM_001197952 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// NM_001197952 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// NM_001197952 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype /// AT1G01040.2 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// AT1G01040.2 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// AT1G01040.2 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// AT1G01040.2 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// AT1G01040.2 // GO:0009908 // flower development // traceable author statement /// AT1G01040.2 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// AT1G01040.2 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// AT1G01040.2 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// AT1G01040.2 // GO:0010098 // suspensor development // inferred from mutant phenotype /// AT1G01040.2 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// AT1G01040.2 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// AT1G01040.2 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// AT1G01040.2 // GO:0031053 // primary miRNA processing // traceable author statement /// AT1G01040.2 // GO:0007275 // multicellular organismal development // inferred from electronic annotation /// AT1G01040.2 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0006396 // RNA processing // inferred from electronic annotation /// AT1G01040.2 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// AT1G01040.2 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype /// AF292940 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// AF292940 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// AF292940 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// AF292940 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// AF292940 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// AF292940 // GO:0006396 // RNA processing // inferred from electronic annotation /// AF292940 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// AF292940 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AF292940 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// AF292940 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// AF292940 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// AF292940 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// AF292940 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// AF292940 // GO:0009908 // flower development // traceable author statement /// AF292940 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// AF292940 // GO:0010098 // suspensor development // inferred from mutant phenotype /// AF292940 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// AF292940 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// AF292940 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// AF292940 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// AF292940 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// AF292940 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AF292940 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// AF292940 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// AF292940 // GO:0031053 // primary miRNA processing // traceable author statement /// AF292940 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// AF292940 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// AF292940 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// AF292940 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// AF292940 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype NM_099986 // GO:0005622 // intracellular // inferred from electronic annotation /// NM_099986 // GO:0005634 // nucleus // inferred from direct assay /// NM_099986 // GO:0010445 // nuclear dicing body // inferred from direct assay /// AT1G01040.1 // GO:0005634 // nucleus // inferred from direct assay /// AT1G01040.1 // GO:0010445 // nuclear dicing body // inferred from direct assay /// AT1G01040.1 // GO:0005622 // intracellular // inferred from electronic annotation /// NM_001197952 // GO:0005622 // intracellular // inferred from electronic annotation /// NM_001197952 // GO:0005634 // nucleus // inferred from direct assay /// NM_001197952 // GO:0010445 // nuclear dicing body // inferred from direct assay /// AT1G01040.2 // GO:0005634 // nucleus // inferred from direct assay /// AT1G01040.2 // GO:0010445 // nuclear dicing body // inferred from direct assay /// AT1G01040.2 // GO:0005622 // intracellular // inferred from electronic annotation /// AF292940 // GO:0005622 // intracellular // inferred from electronic annotation /// AF292940 // GO:0005634 // nucleus // inferred from direct assay /// AF292940 // GO:0010445 // nuclear dicing body // inferred from direct assay "NM_099986 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// NM_099986 // GO:0003677 // DNA binding // inferred from electronic annotation /// NM_099986 // GO:0003723 // RNA binding // inferred from electronic annotation /// NM_099986 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// NM_099986 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// NM_099986 // GO:0004386 // helicase activity // inferred from electronic annotation /// NM_099986 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// NM_099986 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// NM_099986 // GO:0005515 // protein binding // inferred from physical interaction /// NM_099986 // GO:0005524 // ATP binding // inferred from electronic annotation /// NM_099986 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// NM_099986 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// NM_099986 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// AT1G01040.1 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AT1G01040.1 // GO:0004386 // helicase activity // inferred from electronic annotation /// AT1G01040.1 // GO:0005524 // ATP binding // inferred from electronic annotation /// AT1G01040.1 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// AT1G01040.1 // GO:0003677 // DNA binding // inferred from electronic annotation /// AT1G01040.1 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// AT1G01040.1 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01040.1 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// AT1G01040.1 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// AT1G01040.1 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// AT1G01040.1 // GO:0003723 // RNA binding // inferred from electronic annotation /// AT1G01040.1 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// AT1G01040.1 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// NM_001197952 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// NM_001197952 // GO:0003677 // DNA binding // inferred from electronic annotation /// NM_001197952 // GO:0003723 // RNA binding // inferred from electronic annotation /// NM_001197952 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// NM_001197952 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// NM_001197952 // GO:0004386 // helicase activity // inferred from electronic annotation /// NM_001197952 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// NM_001197952 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// NM_001197952 // GO:0005515 // protein binding // inferred from physical interaction /// NM_001197952 // GO:0005524 // ATP binding // inferred from electronic annotation /// NM_001197952 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// NM_001197952 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// NM_001197952 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// AT1G01040.2 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AT1G01040.2 // GO:0004386 // helicase activity // inferred from electronic annotation /// AT1G01040.2 // GO:0005524 // ATP binding // inferred from electronic annotation /// AT1G01040.2 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// AT1G01040.2 // GO:0003677 // DNA binding // inferred from electronic annotation /// AT1G01040.2 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// AT1G01040.2 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01040.2 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// AT1G01040.2 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// AT1G01040.2 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// AT1G01040.2 // GO:0003723 // RNA binding // inferred from electronic annotation /// AT1G01040.2 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// AT1G01040.2 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// AF292940 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AF292940 // GO:0003677 // DNA binding // inferred from electronic annotation /// AF292940 // GO:0003723 // RNA binding // inferred from electronic annotation /// AF292940 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// AF292940 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// AF292940 // GO:0004386 // helicase activity // inferred from electronic annotation /// AF292940 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// AF292940 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// AF292940 // GO:0005515 // protein binding // inferred from physical interaction /// AF292940 // GO:0005524 // ATP binding // inferred from electronic annotation /// AF292940 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// AF292940 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// AF292940 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation " "AT1G01040.1 // Pfam // IPR000999 // Ribonuclease III domain /// AT1G01040.1 // Pfam // IPR001159 // Double-stranded RNA-binding /// AT1G01040.1 // Pfam // IPR001650 // Helicase, C-terminal /// AT1G01040.1 // Pfam // IPR003100 // Argonaute/Dicer protein, PAZ /// AT1G01040.1 // Pfam // IPR005034 // Dicer double-stranded RNA-binding fold /// AT1G01040.1 // Pfam // IPR006935 // Helicase/UvrB domain /// AT1G01040.1 // Pfam // IPR011545 // DNA/RNA helicase, DEAD/DEAH box type, N-terminal /// AT1G01040.2 // Pfam // IPR000999 // Ribonuclease III domain /// AT1G01040.2 // Pfam // IPR001159 // Double-stranded RNA-binding /// AT1G01040.2 // Pfam // IPR001650 // Helicase, C-terminal /// AT1G01040.2 // Pfam // IPR003100 // Argonaute/Dicer protein, PAZ /// AT1G01040.2 // Pfam // IPR005034 // Dicer double-stranded RNA-binding fold /// AT1G01040.2 // Pfam // IPR006935 // Helicase/UvrB domain /// AT1G01040.2 // Pfam // IPR011545 // DNA/RNA helicase, DEAD/DEAH box type, N-terminal" 1 main
13334190 chr1 + 28500 28706 23 --- "At1g01040 // The Institute for Genomic Research // 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] // chr1 // 100 // 100 // 23 // 23 // 0 /// ath-MIR838 // miRBase Micro RNA Database // MI0005394 Arabidopsis thaliana miR838 stem-loop // chr1 // 100 // 100 // 23 // 23 // 0 /// AK221473 // GenBank // Arabidopsis thaliana mRNA for CAF protein, complete cds, clone: RAFL07-36-P21. // chr1 // 87 // 100 // 20 // 23 // 0" At1g01040 At1g01040 // Q9SP32 /// AK221473 // Q56Y50 --- --- --- --- 1 main
13334192 chr1 + 44677 44787 17 NM_001160824 // AT1G01073 // hypothetical protein // --- // 7922546 /// AT1G01073.1 // AT1G01073 // hypothetical protein // --- // 7922546 "NM_001160824 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01073) mRNA, complete cds. // chr1 // 100 // 100 // 17 // 17 // 0 /// AT1G01073.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:44677:44787:1 gene:AT1G01073 transcript:AT1G01073.1 // chr1 // 100 // 100 // 17 // 17 // 0" NM_001160824 --- NM_001160824 // GO:0008150 // biological_process // no biological data available /// AT1G01073.1 // GO:0008150 // biological_process // no biological data available AT1G01073.1 // GO:0012505 // endomembrane system // inferred from electronic annotation NM_001160824 // GO:0003674 // molecular_function // no biological data available /// AT1G01073.1 // GO:0003674 // molecular_function // no biological data available --- 1 main
13334194 chr1 + 52239 54692 19 NM_001123732 // IQD18 // protein IQ-domain 18 // --- // 839394 /// AT1G01110.2 // IQD18 // protein IQ-domain 18 // --- // 839394 /// NM_099993 // IQD18 // protein IQ-domain 18 // --- // 839394 /// AT1G01110.1 // IQD18 // protein IQ-domain 18 // --- // 839394 "NM_001123732 // RefSeq // Arabidopsis thaliana protein IQ-domain 18 (IQD18) mRNA, complete cds. // chr1 // 100 // 100 // 19 // 19 // 0 /// AT1G01110.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:52239:54692:1 gene:AT1G01110 transcript:AT1G01110.2 // chr1 // 100 // 100 // 19 // 19 // 0 /// NM_099993 // RefSeq // Arabidopsis thaliana protein IQ-domain 18 (IQD18) mRNA, complete cds. // chr1 // 100 // 63 // 12 // 12 // 0 /// AT1G01110.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:52869:54685:1 gene:AT1G01110 transcript:AT1G01110.1 // chr1 // 100 // 63 // 12 // 12 // 0 /// At1g01110 // The Institute for Genomic Research // 68414.t00011 expressed protein contains Prosite PS00165: Serine/threonine dehydratases pyridoxal-phosphate attachment site // chr1 // 100 // 63 // 12 // 12 // 0" NM_001123732 AT1G01110.2 NM_099993 // Q8LEL3 /// At1g01110 // Q9MAM4 --- AT1G01110.2 // GO:0005739 // mitochondrion // inferred from electronic annotation /// AT1G01110.1 // GO:0005739 // mitochondrion // inferred from electronic annotation NM_001123732 // GO:0003674 // molecular_function // no biological data available /// AT1G01110.2 // GO:0005515 // protein binding // inferred from electronic annotation /// AT1G01110.2 // GO:0003674 // molecular_function // no biological data available /// NM_099993 // GO:0003674 // molecular_function // no biological data available /// AT1G01110.1 // GO:0003674 // molecular_function // no biological data available "AT1G01110.2 // Pfam // IPR000048 // IQ motif, EF-hand binding site" 1 main
13334202 chr1 + 56624 56740 25 NM_001160825 // AT1G01115 // hypothetical protein // --- // 7922461 /// AT1G01115.1 // AT1G01115 // hypothetical protein // --- // 7922461 "NM_001160825 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01115) mRNA, complete cds. // chr1 // 100 // 100 // 25 // 25 // 0 /// AT1G01115.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:56624:56740:1 gene:AT1G01115 transcript:AT1G01115.1 // chr1 // 100 // 100 // 25 // 25 // 0" NM_001160825 --- NM_001160825 // GO:0008150 // biological_process // no biological data available /// AT1G01115.1 // GO:0008150 // biological_process // no biological data available AT1G01115.1 // GO:0012505 // endomembrane system // inferred from electronic annotation NM_001160825 // GO:0003674 // molecular_function // no biological data available /// AT1G01115.1 // GO:0003674 // molecular_function // no biological data available --- 1 main
13334204 chr1 + 72339 74096 22 NM_001160826 // GIF2 // GRF1-interacting factor 2 // --- // 839278 /// AT1G01160.2 // GIF2 // GRF1-interacting factor 2 // --- // 839278 /// NM_099998 // GIF2 // GRF1-interacting factor 2 // --- // 839278 /// AT1G01160.1 // GIF2 // GRF1-interacting factor 2 // --- // 839278 /// NM_099999 // AT1G01170 // hypothetical protein // --- // 839263 /// NM_001035849 // AT1G01170 // hypothetical protein // --- // 839263 /// AT1G01170.2 // AT1G01170 // hypothetical protein // --- // 839263 /// AT1G01170.1 // AT1G01170 // hypothetical protein // --- // 839263 /// AY102640 // GIF2 // GRF1-interacting factor 2 // --- // 839278 "NM_001160826 // RefSeq // Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA, complete cds. // chr1 // 100 // 100 // 22 // 22 // 0 /// AT1G01160.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:72357:74096:1 gene:AT1G01160 transcript:AT1G01160.2 // chr1 // 100 // 100 // 22 // 22 // 0 /// NM_099998 // RefSeq // Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA, complete cds. // chr1 // 100 // 86 // 19 // 19 // 0 /// AT1G01160.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:72339:74096:1 gene:AT1G01160 transcript:AT1G01160.1 // chr1 // 100 // 86 // 19 // 19 // 0 /// NM_099999 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01170) mRNA, complete cds. // chr1 // 100 // 14 // 3 // 3 // 0 /// NM_001035849 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01170) mRNA, complete cds. // chr1 // 100 // 14 // 3 // 3 // 0 /// AT1G01170.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:73931:74731:-1 gene:AT1G01170 transcript:AT1G01170.2 // chr1 // 100 // 14 // 3 // 3 // 0 /// AT1G01170.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:73931:74737:-1 gene:AT1G01170 transcript:AT1G01170.1 // chr1 // 100 // 14 // 3 // 3 // 0 /// AY102640 // GenBank // Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA, complete cds. // chr1 // 100 // 77 // 17 // 17 // 0 /// At1g01160 // The Institute for Genomic Research // 68414.t00019 SSXT protein-related / transcription co-activator-related similar to SYT/SSX4 fusion protein (GI:11127695) [Homo sapiens]; supporting cDNA gi|21539891|gb|AY102640.1|; contains Pfam profile PF05030: SSXT protein (N-terminal region) // chr1 // 100 // 100 // 22 // 22 // 0" NM_001160826 AT1G01160.2 AY102640 // Q9MAL9 /// At1g01160 // Q9MAL9 "NM_001160826 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// NM_001160826 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// NM_001160826 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// NM_001160826 // GO:0008283 // cell proliferation // inferred from expression pattern /// NM_001160826 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// NM_001160826 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// NM_001160826 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// NM_001160826 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// NM_001160826 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// NM_001160826 // GO:0048366 // leaf development // inferred from mutant phenotype /// NM_001160826 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0008283 // cell proliferation // inferred from expression pattern /// AT1G01160.2 // GO:0048366 // leaf development // inferred from mutant phenotype /// AT1G01160.2 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis /// NM_099998 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// NM_099998 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// NM_099998 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// NM_099998 // GO:0008283 // cell proliferation // inferred from expression pattern /// NM_099998 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// NM_099998 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// NM_099998 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// NM_099998 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// NM_099998 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// NM_099998 // GO:0048366 // leaf development // inferred from mutant phenotype /// NM_099998 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0008283 // cell proliferation // inferred from expression pattern /// AT1G01160.1 // GO:0048366 // leaf development // inferred from mutant phenotype /// AT1G01160.1 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis /// NM_099999 // GO:0006950 // response to stress // inferred from sequence or structural similarity /// NM_001035849 // GO:0006950 // response to stress // inferred from sequence or structural similarity /// AT1G01170.2 // GO:0006950 // response to stress // inferred from sequence or structural similarity /// AT1G01170.1 // GO:0006950 // response to stress // inferred from sequence or structural similarity /// AY102640 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// AY102640 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AY102640 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AY102640 // GO:0008283 // cell proliferation // inferred from expression pattern /// AY102640 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// AY102640 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// AY102640 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AY102640 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// AY102640 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AY102640 // GO:0048366 // leaf development // inferred from mutant phenotype /// AY102640 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis " NM_001160826 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// AT1G01160.2 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// NM_099998 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// AT1G01160.1 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// NM_099999 // GO:0005739 // mitochondrion // inferred from direct assay /// NM_099999 // GO:0016020 // membrane // inferred from direct assay /// NM_001035849 // GO:0005739 // mitochondrion // inferred from direct assay /// NM_001035849 // GO:0016020 // membrane // inferred from direct assay /// AT1G01170.2 // GO:0016020 // membrane // inferred from direct assay /// AT1G01170.2 // GO:0005739 // mitochondrion // inferred from direct assay /// AT1G01170.1 // GO:0016020 // membrane // inferred from direct assay /// AT1G01170.1 // GO:0005739 // mitochondrion // inferred from direct assay /// AY102640 // GO:0005634 // nucleus // inferred from sequence or structural similarity NM_001160826 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// NM_001160826 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01160.2 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01160.2 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// NM_099998 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// NM_099998 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01160.1 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01160.1 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// NM_099999 // GO:0003674 // molecular_function // no biological data available /// NM_001035849 // GO:0003674 // molecular_function // no biological data available /// AT1G01170.2 // GO:0003674 // molecular_function // no biological data available /// AT1G01170.1 // GO:0003674 // molecular_function // no biological data available /// AY102640 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// AY102640 // GO:0005515 // protein binding // inferred from physical interaction AT1G01160.2 // Pfam // IPR007726 // SSXT /// AT1G01160.1 // Pfam // IPR007726 // SSXT /// AT1G01170.2 // Pfam // IPR009515 // Protein of unknown function DUF1138 /// AT1G01170.1 // Pfam // IPR009515 // Protein of unknown function DUF1138 1 main
13334213 chr1 + 75583 76758 16 NM_100000 // AT1G01180 // S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein // --- // 839239 /// AT1G01180.1 // AT1G01180 // S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein // --- // 839239 "NM_100000 // RefSeq // Arabidopsis thaliana S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein (AT1G01180) mRNA, complete cds. // chr1 // 100 // 100 // 16 // 16 // 0 /// AT1G01180.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:75583:76758:1 gene:AT1G01180 transcript:AT1G01180.1 // chr1 // 100 // 100 // 16 // 16 // 0 /// At1g01180 // The Institute for Genomic Research // 68414.t00023 expressed protein // chr1 // 100 // 81 // 13 // 13 // 0" NM_100000 NM_100000 // Q0WRD8 /// At1g01180 // Q9MAL7 NM_100000 // GO:0008610 // lipid biosynthetic process // inferred from electronic annotation /// AT1G01180.1 // GO:0008610 // lipid biosynthetic process // inferred from electronic annotation --- NM_100000 // GO:0008168 // methyltransferase activity // inferred from electronic annotation /// AT1G01180.1 // GO:0008168 // methyltransferase activity // inferred from electronic annotation --- 1 main
13334217 chr1 + 88898 89745 16 NM_100003 // AT1G01210 // DNA-directed RNA polymerase III subunit C11 // --- // 839481 /// AT1G01210.1 // AT1G01210 // DNA-directed RNA polymerase III subunit C11 // --- // 839481 /// BT008671 // AT1G01210 // DNA-directed RNA polymerase III subunit C11 // --- // 839481 "NM_100003 // RefSeq // Arabidopsis thaliana DNA-directed RNA polymerase III subunit C11 (AT1G01210) mRNA, complete cds. // chr1 // 100 // 100 // 16 // 16 // 0 /// AT1G01210.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:88898:89745:1 gene:AT1G01210 transcript:AT1G01210.1 // chr1 // 100 // 100 // 16 // 16 // 0 /// BT008671 // GenBank // Arabidopsis thaliana clone RAFL17-25-D24 (R50415) unknown protein (At1g01210) mRNA, complete cds. // chr1 // 100 // 100 // 16 // 16 // 0 /// At1g01210 // The Institute for Genomic Research // 68414.t00028 DNA-directed RNA polymerase III family protein similar to SP|O13896 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) {Schizosaccharomyces pombe}; contains Pfam profiles PF02150: RNA polymerases M/15 Kd subunit, PF01096: Transcription factor S-II (TFIIS) // chr1 // 100 // 100 // 16 // 16 // 0" NM_100003 AT1G01210.1 NM_100003 // Q9LNK0 /// BT008671 // Q9LNK0 /// At1g01210 // Q9LNK0 "NM_100003 // GO:0006351 // transcription, DNA-dependent // inferred from electronic annotation /// NM_100003 // GO:0006354 // transcription elongation, DNA-dependent // inferred from sequence or structural similarity /// NM_100003 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0006354 // transcription elongation, DNA-dependent // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0006351 // transcription, DNA-dependent // inferred from electronic annotation /// BT008671 // GO:0006351 // transcription, DNA-dependent // inferred from electronic annotation /// BT008671 // GO:0006354 // transcription elongation, DNA-dependent // inferred from sequence or structural similarity /// BT008671 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from sequence or structural similarity " NM_100003 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// BT008671 // GO:0005634 // nucleus // inferred from sequence or structural similarity NM_100003 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// NM_100003 // GO:0003677 // DNA binding // inferred from electronic annotation /// NM_100003 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// NM_100003 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// NM_100003 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// NM_100003 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// NM_100003 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from sequence or structural similarity /// NM_100003 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AT1G01210.1 // GO:0003677 // DNA binding // inferred from electronic annotation /// AT1G01210.1 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// AT1G01210.1 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AT1G01210.1 // GO:0030528 // transcription regulator activity // inferred from electronic annotation /// AT1G01210.1 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AT1G01210.1 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// AT1G01210.1 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from sequence or structural similarity /// BT008671 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// BT008671 // GO:0003677 // DNA binding // inferred from electronic annotation /// BT008671 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// BT008671 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// BT008671 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// BT008671 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// BT008671 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from sequence or structural similarity /// BT008671 // GO:0008270 // zinc ion binding // inferred from electronic annotation "AT1G01210.1 // Pfam // IPR001222 // Zinc finger, TFIIS-type /// AT1G01210.1 // Pfam // IPR001529 // DNA-directed RNA polymerase, M/15kDa subunit" 1 main
13334223 chr1 + 91376 95651 22 NM_100004 // FKGP // L-fucokinase/GDP-L-fucose pyrophosphorylase // --- // 839420 /// AT1G01220.1 // FKGP // L-fucokinase/GDP-L-fucose pyrophosphorylase // --- // 839420 "NM_100004 // RefSeq // Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP) mRNA, complete cds. // chr1 // 100 // 100 // 22 // 22 // 0 /// AT1G01220.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:91376:95651:1 gene:AT1G01220 transcript:AT1G01220.1 // chr1 // 100 // 100 // 22 // 22 // 0 /// At1g01220 // The Institute for Genomic Research // 68414.t00029 GHMP kinase-related contains similarity to L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647 // chr1 // 100 // 77 // 17 // 17 // 0" NM_100004 AT1G01220.1 At1g01220 // Q9LNJ9 NM_100004 // GO:0008152 // metabolic process // inferred from electronic annotation /// NM_100004 // GO:0030244 // cellulose biosynthetic process // inferred from reviewed computational analysis /// NM_100004 // GO:0042352 // GDP-L-fucose salvage // inferred from direct assay /// NM_100004 // GO:0048193 // Golgi vesicle transport // inferred from reviewed computational analysis /// AT1G01220.1 // GO:0016310 // phosphorylation // inferred from electronic annotation /// AT1G01220.1 // GO:0042352 // GDP-L-fucose salvage // inferred from direct assay /// AT1G01220.1 // GO:0008152 // metabolic process // inferred from electronic annotation /// AT1G01220.1 // GO:0030244 // cellulose biosynthetic process // inferred from reviewed computational analysis /// AT1G01220.1 // GO:0048193 // Golgi vesicle transport // inferred from reviewed computational analysis NM_100004 // GO:0005737 // cytoplasm // inferred from electronic annotation /// AT1G01220.1 // GO:0005737 // cytoplasm // inferred from electronic annotation "NM_100004 // GO:0004335 // galactokinase activity // inferred from sequence or structural similarity /// NM_100004 // GO:0005524 // ATP binding // inferred from electronic annotation /// NM_100004 // GO:0005524 // ATP binding // inferred from sequence or structural similarity /// NM_100004 // GO:0016301 // kinase activity // inferred from electronic annotation /// NM_100004 // GO:0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// NM_100004 // GO:0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// NM_100004 // GO:0047341 // fucose-1-phosphate guanylyltransferase activity // inferred from direct assay /// NM_100004 // GO:0050201 // fucokinase activity // inferred from direct assay /// AT1G01220.1 // GO:0016301 // kinase activity // inferred from electronic annotation /// AT1G01220.1 // GO:0005524 // ATP binding // inferred from sequence or structural similarity /// AT1G01220.1 // GO:0004335 // galactokinase activity // inferred from sequence or structural similarity /// AT1G01220.1 // GO:0047341 // fucose-1-phosphate guanylyltransferase activity // inferred from direct assay /// AT1G01220.1 // GO:0050201 // fucokinase activity // inferred from direct assay /// AT1G01220.1 // GO:0005524 // ATP binding // inferred from electronic annotation /// AT1G01220.1 // GO:0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// AT1G01220.1 // GO:0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation " "AT1G01220.1 // Pfam // IPR006204 // GHMP kinase N-terminal domain /// AT1G01220.1 // Pfam // IPR012887 // L-fucokinase /// AT1G01220.1 // Pfam // IPR013750 // GHMP kinase, C-terminal domain" 1 main
13334233 chr1 + 95987 97407 26 NM_100005 // AT1G01225 // NC domain-containing protein-like protein // --- // 839358 /// AT1G01225.1 // AT1G01225 // NC domain-containing protein-like protein // --- // 839358 /// BT024776 // AT1G01225 // NC domain-containing protein-like protein // --- // 839358 "NM_100005 // RefSeq // Arabidopsis thaliana NC domain-containing protein-like protein (AT1G01225) mRNA, complete cds. // chr1 // 100 // 100 // 26 // 26 // 0 /// AT1G01225.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:95987:97407:1 gene:AT1G01225 transcript:AT1G01225.1 // chr1 // 100 // 100 // 26 // 26 // 0 /// BT024776 // GenBank // Arabidopsis thaliana At1g01225 mRNA, complete cds. // chr1 // 100 // 46 // 12 // 12 // 0 /// At1g01225 // The Institute for Genomic Research // 68414.t00030 NC domain-containing protein-related contains weak hit to Pfam profile PF04970: NC domain // chr1 // 100 // 100 // 26 // 26 // 0" NM_100005 AT1G01225.1 NM_100005 // Q8LBP8 /// BT024776 // Q29PY0 /// BT024776 // Q8LBP8 /// At1g01225 // Q29PY0 NM_100005 // GO:0010089 // xylem development // inferred from reviewed computational analysis /// NM_100005 // GO:0010382 // cellular cell wall macromolecule metabolic process // inferred from reviewed computational analysis /// AT1G01225.1 // GO:0010089 // xylem development // inferred from reviewed computational analysis /// AT1G01225.1 // GO:0010382 // cellular cell wall macromolecule metabolic process // inferred from reviewed computational analysis /// BT024776 // GO:0010089 // xylem development // inferred from reviewed computational analysis /// BT024776 // GO:0010382 // cellular cell wall macromolecule metabolic process // inferred from reviewed computational analysis NM_100005 // GO:0005575 // cellular_component // no biological data available /// AT1G01225.1 // GO:0005575 // cellular_component // no biological data available /// BT024776 // GO:0005575 // cellular_component // no biological data available --- AT1G01225.1 // Pfam // IPR007053 // LRAT-like domain 1 main
13334238 chr1 + 97456 99240 20 NM_100006 // AT1G01230 // ORMDL-like protein // --- // 839331 /// AT1G01230.1 // AT1G01230 // ORMDL-like protein // --- // 839331 /// AF360237 // AT1G01230 // ORMDL-like protein // --- // 839331 "NM_100006 // RefSeq // Arabidopsis thaliana ORMDL-like protein (AT1G01230) mRNA, complete cds. // chr1 // 100 // 100 // 20 // 20 // 0 /// AT1G01230.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:97456:99240:1 gene:AT1G01230 transcript:AT1G01230.1 // chr1 // 100 // 100 // 20 // 20 // 0 /// AF360237 // GenBank // Arabidopsis thaliana unknown protein (At1g01230) mRNA, complete cds. // chr1 // 94 // 85 // 16 // 17 // 0 /// At1g01230 // The Institute for Genomic Research // 68414.t00031 ORMDL family protein contains Pfam domain PF04061: ORMDL family // chr1 // 100 // 95 // 19 // 19 // 0" NM_100006 AT1G01230.1 AF360237 // Q9C5I0 /// At1g01230 // Q9C5I0 NM_100006 // GO:0006457 // protein folding // inferred from sequence or structural similarity /// NM_100006 // GO:0006661 // phosphatidylinositol biosynthetic process // inferred from reviewed computational analysis /// NM_100006 // GO:0010286 // heat acclimation // inferred from reviewed computational analysis /// AT1G01230.1 // GO:0006457 // protein folding // inferred from sequence or structural similarity /// AT1G01230.1 // GO:0006661 // phosphatidylinositol biosynthetic process // inferred from reviewed computational analysis /// AT1G01230.1 // GO:0010286 // heat acclimation // inferred from reviewed computational analysis /// AF360237 // GO:0006457 // protein folding // inferred from sequence or structural similarity /// AF360237 // GO:0006661 // phosphatidylinositol biosynthetic process // inferred from reviewed computational analysis /// AF360237 // GO:0010286 // heat acclimation // inferred from reviewed computational analysis NM_100006 // GO:0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// NM_100006 // GO:0016021 // integral to membrane // inferred from electronic annotation /// AT1G01230.1 // GO:0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// AT1G01230.1 // GO:0016021 // integral to membrane // inferred from electronic annotation /// AF360237 // GO:0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// AF360237 // GO:0016021 // integral to membrane // inferred from electronic annotation NM_100006 // GO:0003674 // molecular_function // no biological data available /// AT1G01230.1 // GO:0003674 // molecular_function // no biological data available /// AF360237 // GO:0003674 // molecular_function // no biological data available AT1G01230.1 // Pfam // IPR007203 // ORMDL 1 main
13334244 chr1 + 99894 101834 23 NM_202007 // AT1G01240 // hypothetical protein // --- // 839274 /// AT1G01240.3 // AT1G01240 // hypothetical protein // --- // 839274 /// NM_100007 // AT1G01240 // hypothetical protein // --- // 839274 /// AT1G01240.1 // AT1G01240 // hypothetical protein // --- // 839274 /// NM_202006 // AT1G01240 // hypothetical protein // --- // 839274 /// AT1G01240.2 // AT1G01240 // hypothetical protein // --- // 839274 /// AF428444 // AT1G01240 // hypothetical protein // --- // 839274 "NM_202007 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01240) mRNA, complete cds. // chr1 // 100 // 100 // 23 // 23 // 0 /// AT1G01240.3 // ENSEMBL // cdna:known chromosome:TAIR10:1:99894:101834:1 gene:AT1G01240 transcript:AT1G01240.3 // chr1 // 100 // 100 // 23 // 23 // 0 /// NM_100007 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01240) mRNA, complete cds. // chr1 // 100 // 57 // 13 // 13 // 0 /// AT1G01240.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:99922:101834:1 gene:AT1G01240 transcript:AT1G01240.1 // chr1 // 100 // 57 // 13 // 13 // 0 /// NM_202006 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01240) mRNA, complete cds. // chr1 // 100 // 52 // 12 // 12 // 0 /// AT1G01240.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:100031:101834:1 gene:AT1G01240 transcript:AT1G01240.2 // chr1 // 100 // 52 // 12 // 12 // 0 /// AF428444 // GenBank // Arabidopsis thaliana At1g01240/F6F3_11 mRNA, complete cds. // chr1 // 100 // 57 // 13 // 13 // 0 /// At1g01240 // The Institute for Genomic Research // 68414.t00032 expressed protein // chr1 // 100 // 100 // 23 // 23 // 0" NM_202007 AF428444 // Q9LNJ7 /// At1g01240 // Q9LNJ7 --- --- --- --- 1 main
13334251 chr1 + 108946 111609 30 NM_001197954 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// AT1G01260.3 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// NM_100009 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// AT1G01260.1 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// NM_001083971 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// AT1G01260.2 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// AY120752 // AT1G01260 // transcription factor bHLH13 // --- // 839545 "NM_001197954 // RefSeq // Arabidopsis thaliana transcription factor bHLH13 (AT1G01260) mRNA, complete cds. // chr1 // 100 // 90 // 27 // 27 // 0 /// AT1G01260.3 // ENSEMBL // cdna:known chromosome:TAIR10:1:108946:111597:1 gene:AT1G01260 transcript:AT1G01260.3 // chr1 // 100 // 90 // 27 // 27 // 0 /// NM_100009 // RefSeq // Arabidopsis thaliana transcription factor bHLH13 (AT1G01260) mRNA, complete cds. // chr1 // 100 // 87 // 26 // 26 // 0 /// AT1G01260.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:109032:111609:1 gene:AT1G01260 transcript:AT1G01260.1 // chr1 // 100 // 87 // 26 // 26 // 0 /// NM_001083971 // RefSeq // Arabidopsis thaliana transcription factor bHLH13 (AT1G01260) mRNA, complete cds. // chr1 // 100 // 50 // 15 // 15 // 0 /// AT1G01260.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:109076:111535:1 gene:AT1G01260 transcript:AT1G01260.2 // chr1 // 100 // 50 // 15 // 15 // 0 /// AY120752 // GenBank // Arabidopsis thaliana transcription factor MYC7E, putative (At1g01260) mRNA, complete cds. // chr1 // 100 // 87 // 26 // 26 // 0 /// At1g01260 // The Institute for Genomic Research // 68414.t00034 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain // chr1 // 100 // 87 // 26 // 26 // 0" NM_001197954 AY120752 // Q9LNJ5 /// At1g01260 // Q9LNJ5 "NM_001197954 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// NM_001197954 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// NM_001197954 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// AT1G01260.3 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// AT1G01260.3 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// AT1G01260.3 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// NM_100009 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// NM_100009 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// NM_100009 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// AT1G01260.1 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// AT1G01260.1 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// AT1G01260.1 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// NM_001083971 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// NM_001083971 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// NM_001083971 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// AT1G01260.2 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// AT1G01260.2 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// AT1G01260.2 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// AY120752 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// AY120752 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// AY120752 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis " --- NM_001197954 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// NM_001197954 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01260.3 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AT1G01260.3 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// NM_100009 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// NM_100009 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01260.1 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AT1G01260.1 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// NM_001083971 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// NM_001083971 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01260.2 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AT1G01260.2 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AY120752 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AY120752 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity --- 1 main
13334260 chr1 + 112263 113947 20 "NM_100010 // CYP703A2 // cytochrome P450, family 703, subfamily A, polypeptide 2 // --- // 839470 /// AT1G01280.1 // CYP703A2 // cytochrome P450, family 703, subfamily A, polypeptide 2 // --- // 839470 /// BT022023 // CYP703A2 // cytochrome P450, family 703, subfamily A, polypeptide 2 // --- // 839470" "NM_100010 // RefSeq // Arabidopsis thaliana cytochrome P450, family 703, subfamily A, polypeptide 2 (CYP703A2) mRNA, complete cds. // chr1 // 100 // 100 // 20 // 20 // 0 /// AT1G01280.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:112263:113947:1 gene:AT1G01280 transcript:AT1G01280.1 // chr1 // 100 // 100 // 20 // 20 // 0 /// BT022023 // GenBank // Arabidopsis thaliana At1g01280 gene, complete cds. // chr1 // 90 // 100 // 18 // 20 // 0 /// At1g01280 // The Institute for Genomic Research // 68414.t00035 cytochrome P450 family protein similar to cytochrome P450 GB:BAA92894 GI:7339658 from [ Petunia hybrida] // chr1 // 100 // 100 // 20 // 20 // 0" NM_100010 AT1G01280.1 BT022023 // Q9LNJ4 /// At1g01280 // Q9LNJ4 NM_100010 // GO:0010208 // pollen wall assembly // inferred from mutant phenotype /// NM_100010 // GO:0010584 // pollen exine formation // inferred from mutant phenotype /// NM_100010 // GO:0010584 // pollen exine formation // inferred from reviewed computational analysis /// NM_100010 // GO:0051791 // medium-chain fatty acid metabolic process // inferred from direct assay /// NM_100010 // GO:0051792 // medium-chain fatty acid biosynthetic process // inferred from direct assay /// NM_100010 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// NM_100010 // GO:0080110 // sporopollenin biosynthetic process // inferred from mutant phenotype /// NM_100010 // GO:0080110 // sporopollenin biosynthetic process // traceable author statement /// AT1G01280.1 // GO:0010584 // pollen exine formation // inferred from mutant phenotype /// AT1G01280.1 // GO:0080110 // sporopollenin biosynthetic process // inferred from mutant phenotype /// AT1G01280.1 // GO:0010208 // pollen wall assembly // inferred from mutant phenotype /// AT1G01280.1 // GO:0051791 // medium-chain fatty acid metabolic process // inferred from direct assay /// AT1G01280.1 // GO:0051792 // medium-chain fatty acid biosynthetic process // inferred from direct assay /// AT1G01280.1 // GO:0010584 // pollen exine formation // inferred from reviewed computational analysis /// AT1G01280.1 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// AT1G01280.1 // GO:0080110 // sporopollenin biosynthetic process // traceable author statement /// BT022023 // GO:0010208 // pollen wall assembly // inferred from mutant phenotype /// BT022023 // GO:0010584 // pollen exine formation // inferred from mutant phenotype /// BT022023 // GO:0010584 // pollen exine formation // inferred from reviewed computational analysis /// BT022023 // GO:0051791 // medium-chain fatty acid metabolic process // inferred from direct assay /// BT022023 // GO:0051792 // medium-chain fatty acid biosynthetic process // inferred from direct assay /// BT022023 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// BT022023 // GO:0080110 // sporopollenin biosynthetic process // inferred from mutant phenotype /// BT022023 // GO:0080110 // sporopollenin biosynthetic process // traceable author statement AT1G01280.1 // GO:0012505 // endomembrane system // inferred from electronic annotation "NM_100010 // GO:0005506 // iron ion binding // inferred from electronic annotation /// NM_100010 // GO:0009055 // electron carrier activity // inferred from electronic annotation /// NM_100010 // GO:0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// NM_100010 // GO:0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// NM_100010 // GO:0019825 // oxygen binding // inferred from sequence or structural similarity /// NM_100010 // GO:0020037 // heme binding // inferred from electronic annotation /// AT1G01280.1 // GO:0019825 // oxygen binding // inferred from sequence or structural similarity /// AT1G01280.1 // GO:0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// AT1G01280.1 // GO:0005506 // iron ion binding // inferred from electronic annotation /// AT1G01280.1 // GO:0009055 // electron carrier activity // inferred from electronic annotation /// AT1G01280.1 // GO:0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// AT1G01280.1 // GO:0020037 // heme binding // inferred from electronic annotation /// BT022023 // GO:0005506 // iron ion binding // inferred from electronic annotation /// BT022023 // GO:0009055 // electron carrier activity // inferred from electronic annotation /// BT022023 // GO:0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// BT022023 // GO:0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// BT022023 // GO:0019825 // oxygen binding // inferred from sequence or structural similarity /// BT022023 // GO:0020037 // heme binding // inferred from electronic annotation " AT1G01280.1 // Pfam // IPR001128 // Cytochrome P450 1 main
13334264 chr1 + 114286 116108 23 NM_100011 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445 /// NM_001160827 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445 /// AT1G01290.1 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445 /// AT1G01290.2 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445 /// BT025641 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445 "NM_100011 // RefSeq // Arabidopsis thaliana Molybdopterin biosynthesis protein CNX3 (CNX3) mRNA, complete cds. // chr1 // 100 // 78 // 18 // 18 // 0 /// NM_001160827 // RefSeq // Arabidopsis thaliana Molybdopterin biosynthesis protein CNX3 (CNX3) mRNA, complete cds. // chr1 // 100 // 78 // 18 // 18 // 0 /// AT1G01290.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:114286:115549:1 gene:AT1G01290 transcript:AT1G01290.1 // chr1 // 100 // 78 // 18 // 18 // 0 /// AT1G01290.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:114286:116108:1 gene:AT1G01290 transcript:AT1G01290.2 // chr1 // 100 // 78 // 18 // 18 // 0 /// BT025641 // GenBank // Arabidopsis thaliana At1g01290 mRNA, complete cds. // chr1 // 100 // 39 // 9 // 9 // 0 /// At1g01290 // The Institute for Genomic Research // 68414.t00036 molybdopterin biosynthesis CNX3 protein / molybdenum cofactor biosynthesis enzyme CNX3 (CNX3) identical to molybdopterin biosynthesis CNX3 protein SP|Q39056 from [Arabidopsis thaliana] // chr1 // 100 // 78 // 18 // 18 // 0" NM_100011 AT1G01290.1 NM_100011 // Q39056 /// BT025641 // Q1ECR4 /// BT025641 // Q39056 /// At1g01290 // Q39056 NM_100011 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// NM_100011 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction /// NM_001160827 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// NM_001160827 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction /// AT1G01290.1 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction /// AT1G01290.1 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// AT1G01290.2 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction /// AT1G01290.2 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// BT025641 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// BT025641 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction NM_100011 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// NM_100011 // GO:0009507 // chloroplast // inferred from sequence or structural similarity /// NM_001160827 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// NM_001160827 // GO:0009507 // chloroplast // inferred from sequence or structural similarity /// AT1G01290.1 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// AT1G01290.1 // GO:0009507 // chloroplast // inferred from sequence or structural similarity /// AT1G01290.2 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// AT1G01290.2 // GO:0009507 // chloroplast // inferred from sequence or structural similarity /// BT025641 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// BT025641 // GO:0009507 // chloroplast // inferred from sequence or structural similarity NM_100011 // GO:0003824 // catalytic activity // inferred from genetic interaction /// NM_001160827 // GO:0003824 // catalytic activity // inferred from genetic interaction /// AT1G01290.1 // GO:0003824 // catalytic activity // inferred from genetic interaction /// AT1G01290.2 // GO:0003824 // catalytic activity // inferred from genetic interaction /// BT025641 // GO:0003824 // catalytic activity // inferred from genetic interaction AT1G01290.1 // Pfam // IPR002820 // Molybdopterin cofactor biosynthesis C (MoaC) domain /// AT1G01290.2 // Pfam // IPR002820 // Molybdopterin cofactor biosynthesis C (MoaC) domain 1 main
13334270 chr1 + 116943 118764 25 NM_100012 // AT1G01300 // aspartyl protease-like protein // --- // 839375 /// AT1G01300.1 // AT1G01300 // aspartyl protease-like protein // --- // 839375 /// AY128344 // AT1G01300 // aspartyl protease-like protein // --- // 839375 "NM_100012 // RefSeq // Arabidopsis thaliana aspartyl protease-like protein (AT1G01300) mRNA, complete cds. // chr1 // 100 // 100 // 25 // 25 // 0 /// AT1G01300.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:116943:118764:1 gene:AT1G01300 transcript:AT1G01300.1 // chr1 // 100 // 100 // 25 // 25 // 0 /// AY128344 // GenBank // Arabidopsis thaliana chloroplast nucleoid DNA binding protein, putative (At1g01300) mRNA, complete cds. // chr1 // 100 // 64 // 16 // 16 // 0 /// At1g01300 // The Institute for Genomic Research // 68414.t00037 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease // chr1 // 100 // 100 // 25 // 25 // 0 /// BX818267 // GenBank HTC // Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL6ZE10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress). // chr1 // 25 // 48 // 3 // 12 // 1" NM_100012 AT1G01300.1 NM_100012 // Q8L9B9 /// NM_100012 // Q0WLZ1 /// AY128344 // Q9LNJ3 /// AY128344 // Q8L9B9 /// AY128344 // Q0WLZ1 /// At1g01300 // Q9LNJ3 /// At1g01300 // Q9LNJ3 NM_100012 // GO:0006508 // proteolysis // inferred from electronic annotation /// NM_100012 // GO:0006508 // proteolysis // inferred from sequence or structural similarity /// NM_100012 // GO:0009664 // plant-type cell wall organization // inferred from reviewed computational analysis /// NM_100012 // GO:0042545 // cell wall modification // inferred from reviewed computational analysis /// NM_100012 // GO:0080167 // response to karrikin // inferred from expression pattern /// AT1G01300.1 // GO:0006508 // proteolysis // inferred from sequence or structural similarity /// AT1G01300.1 // GO:0080167 // response to karrikin // inferred from expression pattern /// AT1G01300.1 // GO:0006508 // proteolysis // inferred from electronic annotation /// AT1G01300.1 // GO:0009664 // plant-type cell wall organization // inferred from reviewed computational analysis /// AT1G01300.1 // GO:0042545 // cell wall modification // inferred from reviewed computational analysis /// AY128344 // GO:0006508 // proteolysis // inferred from electronic annotation /// AY128344 // GO:0006508 // proteolysis // inferred from sequence or structural similarity /// AY128344 // GO:0009664 // plant-type cell wall organization // inferred from reviewed computational analysis /// AY128344 // GO:0042545 // cell wall modification // inferred from reviewed computational analysis /// AY128344 // GO:0080167 // response to karrikin // inferred from expression pattern NM_100012 // GO:0009505 // plant-type cell wall // inferred from direct assay /// NM_100012 // GO:0016020 // membrane // inferred from direct assay /// AT1G01300.1 // GO:0016020 // membrane // inferred from direct assay /// AT1G01300.1 // GO:0009505 // plant-type cell wall // inferred from direct assay /// AY128344 // GO:0009505 // plant-type cell wall // inferred from direct assay /// AY128344 // GO:0016020 // membrane // inferred from direct assay NM_100012 // GO:0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// AT1G01300.1 // GO:0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// AY128344 // GO:0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation AT1G01300.1 // Pfam // IPR001461 // Peptidase A1 1 main
13334274 chr1 + 119397 119997 23 NM_001123733 // AT1G01305 // hypothetical protein // --- // 6240609 /// AT1G01305.1 // AT1G01305 // hypothetical protein // --- // 6240609 "NM_001123733 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01305) mRNA, complete cds. // chr1 // 100 // 100 // 23 // 23 // 0 /// AT1G01305.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:119397:119997:1 gene:AT1G01305 transcript:AT1G01305.1 // chr1 // 100 // 100 // 23 // 23 // 0" NM_001123733 --- NM_001123733 // GO:0008150 // biological_process // no biological data available /// AT1G01305.1 // GO:0008150 // biological_process // no biological data available AT1G01305.1 // GO:0012505 // endomembrane system // inferred from electronic annotation NM_001123733 // GO:0003674 // molecular_function // no biological data available /// AT1G01305.1 // GO:0003674 // molecular_function // no biological data available --- 1 main
13334277 chr1 + 120154 121130 24 NM_100013 // AT1G01310 // allergen V5/Tpx-1-related family protein // --- // 839333 /// AT1G01310.1 // AT1G01310 // allergen V5/Tpx-1-related family protein // --- // 839333 /// NM_001197955 // AT1G01320 // tetratricopeptide repeat-containing protein // --- // 839293 /// AT1G01320.2 // AT1G01320 // tetratricopeptide repeat-containing protein // --- // 839293 /// BT014786 // AT1G01310 // allergen V5/Tpx-1-related family protein // --- // 839333 "NM_100013 // RefSeq // Arabidopsis thaliana allergen V5/Tpx-1-related family protein (AT1G01310) mRNA, complete cds. // chr1 // 100 // 100 // 24 // 24 // 0 /// AT1G01310.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:120154:121130:1 gene:AT1G01310 transcript:AT1G01310.1 // chr1 // 100 // 100 // 24 // 24 // 0 /// NM_001197955 // RefSeq // Arabidopsis thaliana tetratricopeptide repeat-containing protein (AT1G01320) mRNA, complete cds. // chr1 // 100 // 4 // 1 // 1 // 0 /// AT1G01320.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:121067:130577:-1 gene:AT1G01320 transcript:AT1G01320.2 // chr1 // 100 // 4 // 1 // 1 // 0 /// BT014786 // GenBank // Arabidopsis thaliana At1g01310 gene, complete cds. // chr1 // 100 // 79 // 19 // 19 // 0 /// At1g01310 // The Institute for Genomic Research // 68414.t00038 allergen V5/Tpx-1-related family protein similar to pathogenesis related protein-1 GB:AAC25629 GI:3290004 from [Zea mays]; contains Pfam profile PF00188: SCP-like extracellular protein // chr1 // 100 // 100 // 24 // 24 // 0" NM_100013 AT1G01310.1 NM_001197955 // Q8H2C0 /// BT014786 // Q6ID87 /// At1g01310 // Q6ID87 NM_100013 // GO:0008150 // biological_process // no biological data available /// AT1G01310.1 // GO:0008150 // biological_process // no biological data available /// NM_001197955 // GO:0016556 // mRNA modification // inferred from reviewed computational analysis /// AT1G01320.2 // GO:0016556 // mRNA modification // inferred from reviewed computational analysis /// BT014786 // GO:0008150 // biological_process // no biological data available NM_100013 // GO:0005576 // extracellular region // inferred from electronic annotation /// NM_100013 // GO:0005576 // extracellular region // inferred from sequence or structural similarity /// AT1G01310.1 // GO:0005576 // extracellular region // inferred from sequence or structural similarity /// AT1G01310.1 // GO:0005576 // extracellular region // inferred from electronic annotation /// BT014786 // GO:0005576 // extracellular region // inferred from electronic annotation /// BT014786 // GO:0005576 // extracellular region // inferred from sequence or structural similarity NM_100013 // GO:0003674 // molecular_function // no biological data available /// AT1G01310.1 // GO:0003674 // molecular_function // no biological data available /// AT1G01320.2 // GO:0005515 // protein binding // inferred from electronic annotation /// AT1G01320.2 // GO:0005488 // binding // inferred from electronic annotation /// BT014786 // GO:0003674 // molecular_function // no biological data available AT1G01310.1 // Pfam // IPR014044 // CAP domain /// AT1G01320.2 // Pfam // IPR001440 // Tetratricopeptide TPR-1 /// AT1G01320.2 // Pfam // IPR013105 // Tetratricopeptide TPR2 1 main
13334281 chr1 + 136124 138162 21 NM_100017 // AT1G01350 // zinc finger CCCH domain-containing protein 1 // --- // 838964 /// AT1G01350.1 // AT1G01350 // zinc finger CCCH domain-containing protein 1 // --- // 838964 "NM_100017 // RefSeq // Arabidopsis thaliana zinc finger CCCH domain-containing protein 1 (AT1G01350) mRNA, complete cds. // chr1 // 100 // 100 // 21 // 21 // 0 /// AT1G01350.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:136124:138162:1 gene:AT1G01350 transcript:AT1G01350.1 // chr1 // 100 // 100 // 21 // 21 // 0 /// At1g01350 // The Institute for Genomic Research // 68414.t00041 zinc finger (CCCH-type/C3HC4-type RING finger) family protein similar to SP|O15541 Zinc finger protein 183 {Homo sapiens}; contains Pfam profiles PF04396: Protein of unknown function, DUF537, PF00097: Zinc finger, C3HC4 type (RING finger), PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) // chr1 // 100 // 52 // 11 // 11 // 0" NM_100017 AT1G01350.1 NM_100017 // C0SUR6 /// At1g01350 // Q8GX84 --- --- NM_100017 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// NM_100017 // GO:0003676 // nucleic acid binding // inferred from sequence or structural similarity /// NM_100017 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AT1G01350.1 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AT1G01350.1 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AT1G01350.1 // GO:0003676 // nucleic acid binding // inferred from sequence or structural similarity "AT1G01350.1 // Pfam // IPR000571 // Zinc finger, CCCH-type /// AT1G01350.1 // Pfam // IPR018957 // Zinc finger, C3HC4 RING-type" 1 main

Total number of rows: 38506

Table truncated, full table size 96689 Kbytes.




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