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Status
Public on Sep 12, 2013
Title
NimbleGen Burkholderia pseudomallei K96243 385K tiling array [071211_BPK96243_CO_Tiling]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Burkholderia pseudomallei K96243 Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
NimbleGen design name 071211_BPK96243_CO_Tiling. A 385K tiling expression array fabricated by Roche NimbleGen (Roche NimbleGen, USA) based on the BpK96243 reference genome PRJNA57733_AssemblyASM1154v1 (Holden et al. 2004). The array contains 384,926 50-mer oligonucleotide probes representing both sense and antisense strands, with an overlapping mean distance of 15 bp between adjacent probes. Collectively, 95.1% of the BpK96243 non-repetivitive genome, including genic and intergenic regions, are represented on the array. Control probes without sequence similarity to BpK96243 were included for background correction and array alignment.
Submission date
Dec 29, 2012
Last update date
Sep 12, 2013
Contact name
Wen Fong Ooi
E-mail(s)
ooiwf@gis.a-star.edu.sg Organization name
Genome Institute of Singapore
Lab
Infectious Disease 2
Street address
60 Biopolis Street, Genome, #02-01
City
Singapore
ZIP/Postal code
138672
Country
Singapore
Samples (382)
GSM1058288 , GSM1058289 , GSM1058290 , GSM1058291 , GSM1058292 , GSM1058293
GSM1058294 ,
GSM1058295 ,
GSM1058296 ,
GSM1058297 ,
GSM1058298 ,
GSM1058299 ,
GSM1058300 ,
GSM1058301 ,
GSM1058302 ,
GSM1058303 ,
GSM1058304 ,
GSM1058305 ,
GSM1058306 ,
GSM1058307 ,
GSM1058308 ,
GSM1058309 ,
GSM1058310 ,
GSM1058311 ,
GSM1058312 ,
GSM1058313 ,
GSM1058314 ,
GSM1058315 ,
GSM1058316 ,
GSM1058317 ,
GSM1058318 ,
GSM1058319 ,
GSM1058320 ,
GSM1058321 ,
GSM1058322 ,
GSM1058323 ,
GSM1058324 ,
GSM1058325 ,
GSM1058326 ,
GSM1058327 ,
GSM1058328 ,
GSM1058329 ,
GSM1058330 ,
GSM1058331 ,
GSM1058332 ,
GSM1058333 ,
GSM1058334 ,
GSM1058335 ,
GSM1058336 ,
GSM1058337 ,
GSM1058338 ,
GSM1058339 ,
GSM1058340 ,
GSM1058341 ,
GSM1058342 ,
GSM1058343 ,
GSM1058344 ,
GSM1058345 ,
GSM1058346 ,
GSM1058347 ,
GSM1058348 ,
GSM1058349 ,
GSM1058350 ,
GSM1058351 ,
GSM1058352 ,
GSM1058353 ,
GSM1058354 ,
GSM1058355 ,
GSM1058356 ,
GSM1058357 ,
GSM1058358 ,
GSM1058359 ,
GSM1058360 ,
GSM1058361 ,
GSM1058362 ,
GSM1058363 ,
GSM1058364 ,
GSM1058365 ,
GSM1058366 ,
GSM1058367 ,
GSM1058368 ,
GSM1058369 ,
GSM1058370 ,
GSM1058371 ,
GSM1058372 ,
GSM1058373 ,
GSM1058374 ,
GSM1058375 ,
GSM1058376 ,
GSM1058377 ,
GSM1058378 ,
GSM1058379 ,
GSM1058380 ,
GSM1058381 ,
GSM1058382 ,
GSM1058383 ,
GSM1058384 ,
GSM1058385 ,
GSM1058386 ,
GSM1058387 ,
GSM1058388 ,
GSM1058389 ,
GSM1058390 ,
GSM1058391 ,
GSM1058392 ,
GSM1058393 ,
GSM1058394 ,
GSM1058395 ,
GSM1058396 ,
GSM1058397 ,
GSM1058398 ,
GSM1058399 ,
GSM1058400 ,
GSM1058401 ,
GSM1058402 ,
GSM1058403 ,
GSM1058404 ,
GSM1058405 ,
GSM1058406 ,
GSM1058407 ,
GSM1058408 ,
GSM1058409 ,
GSM1058410 ,
GSM1058411 ,
GSM1058412 ,
GSM1058413 ,
GSM1058414 ,
GSM1058415 ,
GSM1058416 ,
GSM1058417 ,
GSM1058418 ,
GSM1058419 ,
GSM1058420 ,
GSM1058421 ,
GSM1058422 ,
GSM1058423 ,
GSM1058424 ,
GSM1058425 ,
GSM1058426 ,
GSM1058427 ,
GSM1058428 ,
GSM1058429 ,
GSM1058430 ,
GSM1058431 ,
GSM1058432 ,
GSM1058433 ,
GSM1058434 ,
GSM1058435 ,
GSM1058436 ,
GSM1058437 ,
GSM1058438 ,
GSM1058439 ,
GSM1058440 ,
GSM1058441 ,
GSM1058442 ,
GSM1058443 ,
GSM1058444 ,
GSM1058445 ,
GSM1058446 ,
GSM1058447 ,
GSM1058448 ,
GSM1058449 ,
GSM1058450 ,
GSM1058451 ,
GSM1058452 ,
GSM1058453 ,
GSM1058454 ,
GSM1058455 ,
GSM1058456 ,
GSM1058457 ,
GSM1058458 ,
GSM1058459 ,
GSM1058460 ,
GSM1058461 ,
GSM1058462 ,
GSM1058463 ,
GSM1058464 ,
GSM1058465 ,
GSM1058466 ,
GSM1058467 ,
GSM1058468 ,
GSM1058469 ,
GSM1058470 ,
GSM1058471 ,
GSM1058472 ,
GSM1058473 ,
GSM1058474 ,
GSM1058475 ,
GSM1058476 ,
GSM1058477 ,
GSM1058478 ,
GSM1058479 ,
GSM1058480 ,
GSM1058481 ,
GSM1058482 ,
GSM1058483 ,
GSM1058484 ,
GSM1058485 ,
GSM1058486 ,
GSM1058487 ,
GSM1058488 ,
GSM1058489 ,
GSM1058490 ,
GSM1058491 ,
GSM1058492 ,
GSM1058493 ,
GSM1058494 ,
GSM1058495 ,
GSM1058496 ,
GSM1058497 ,
GSM1058498 ,
GSM1058499 ,
GSM1058500 ,
GSM1058501 ,
GSM1058502 ,
GSM1058503 ,
GSM1058504 ,
GSM1058505 ,
GSM1058506 ,
GSM1058507 ,
GSM1058508 ,
GSM1058509 ,
GSM1058510 ,
GSM1058511 ,
GSM1058512 ,
GSM1058513 ,
GSM1058514 ,
GSM1058515 ,
GSM1058517 ,
GSM1058518 ,
GSM1058519 ,
GSM1058520 ,
GSM1058521 ,
GSM1058522 ,
GSM1058523 ,
GSM1058524 ,
GSM1058525 ,
GSM1058526 ,
GSM1058527 ,
GSM1058528 ,
GSM1058529 ,
GSM1058530 ,
GSM1058531 ,
GSM1058532 ,
GSM1058533 ,
GSM1058534 ,
GSM1058535 ,
GSM1058536 ,
GSM1058537 ,
GSM1058538 ,
GSM1058539 ,
GSM1058540 ,
GSM1058541 ,
GSM1058542 ,
GSM1058543 ,
GSM1058544 ,
GSM1058545 ,
GSM1058546 ,
GSM1058547 ,
GSM1058548 ,
GSM1058549 ,
GSM1058550 ,
GSM1058551 ,
GSM1058552 ,
GSM1058553 ,
GSM1058554 ,
GSM1058555 ,
GSM1058556 ,
GSM1058557 ,
GSM1058558 ,
GSM1058559 ,
GSM1058560 ,
GSM1058561 ,
GSM1058562 ,
GSM1058563 ,
GSM1058564 ,
GSM1058565 ,
GSM1058566 ,
GSM1058567 ,
GSM1058568 ,
GSM1058569 ,
GSM1058570 ,
GSM1058571 ,
GSM1058572 ,
GSM1058573 ,
GSM1058574 ,
GSM1058575 ,
GSM1058576 ,
GSM1058577 ,
GSM1058578 ,
GSM1058579 ,
GSM1058580 ,
GSM1058581 ,
GSM1058582 ,
GSM1058583 ,
GSM1058584 ,
GSM1058585 ,
GSM1058586 ,
GSM1058587 ,
GSM1058588 ,
GSM1058589 ,
GSM1058590 ,
GSM1058591 ,
GSM1058592 ,
GSM1058593 ,
GSM1058594 ,
GSM1058595 ,
GSM1058596 ,
GSM1058597 ,
GSM1058598 ,
GSM1058599 ,
GSM1058600 ,
GSM1058601 ,
GSM1058602 ,
GSM1058603 ,
GSM1058604 ,
GSM1058605 ,
GSM1058606 ,
GSM1058607 ,
GSM1058608 ,
GSM1058609 ,
GSM1058610 ,
GSM1058611 ,
GSM1058612 ,
GSM1058613 ,
GSM1058614 ,
GSM1058615 ,
GSM1058616 ,
GSM1058617 ,
GSM1058618 ,
GSM1058619 ,
GSM1058620 ,
GSM3018244 ,
GSM3018245 ,
GSM3018246 ,
GSM3018247 ,
GSM3018248 ,
GSM3018249 ,
GSM4831722 ,
GSM4831723 ,
GSM4831724 ,
GSM4831725 ,
GSM4831726 ,
GSM4831727 ,
GSM4831728 ,
GSM4831729 ,
GSM4831730 ,
GSM4831731 ,
GSM4831732 ,
GSM4831733 ,
GSM4831734 ,
GSM4831735 ,
GSM4831736 ,
GSM4831737 ,
GSM4831738 ,
GSM4831739 ,
GSM4831740 ,
GSM4831741 ,
GSM4831742 ,
GSM4831743 ,
GSM4831744 ,
GSM4831745 ,
GSM4831746 ,
GSM4831747 ,
GSM4831748 ,
GSM4831749 ,
GSM4831750 ,
GSM4831751 ,
GSM4831752 ,
GSM4831753 ,
GSM4831754 ,
GSM4831755 ,
GSM4831756 ,
GSM4831757 ,
GSM4831758 ,
GSM4831759 ,
GSM4831760 ,
GSM4831761 ,
GSM4831762 ,
GSM4831763 ,
GSM4831764 ,
GSM4831765 Series (3)
GSE43205 The Condition-Dependent Transcriptional Landscape of Burkholderia pseudomallei
GSE110883 Identification of a novel LysR-type regulator involved in virulence and primary and secondary metabolism of Burkholderia pseudomallei.
GSE159521 RegAB Two-Component System Homolog of Burkholderia pseudomallei is the Master Regulator of Redox Control and involved in Virulence.
Data table header descriptions ID PROBE_ID. The identifier of each probe of length 50bp.
SEQ_ID POSITION X Y SEQUENCE
Data table ID SEQ_ID POSITION X Y SEQUENCE CHR01FS002007743
chr1:1-4074542
2007743
598
12
GATCCGGTCGAACGGCAGTGCGTGGTGCCGGTACACGCGGCGCAGATCGT
CHR01FS003790405
chr1:1-4074542
3790405
600
12
CGCGAAGGCGCACTGGGAGCAATTGCTGTCGTCGTACCTGCAGACCCGGC
CHR01FS002203007
chr1:1-4074542
2203007
602
12
GGCCGCATCGGAATCGTCTCGGCGATCGACGCGGCGGGCAAATCGCCCGC
CHR01_RS000352456
chr1:1-4074542
352456
604
12
AGAACCAGTGGAAGTACGCGGTCGCGAACGCGCGATCGGTGCGCTCGTAC
CHR01FS002503906
chr1:1-4074542
2503906
606
12
TCGGCAAGACTCACGTGCTCGAAATCGACCGGCACGAAACGCAGCGAACG
CHR02FS002255968
chr2:1-3173005
2255968
608
12
TCGGGATCAGTTCCGGCAACGGTTGGTCCGATTCGACGATCGCGTCCACT
CHR01FS001059566
chr1:1-4074542
1059566
610
12
TCGGGCGCGAGGCCGTGCACGCGCACGACGAAGATGCCCGACAGGGCCGG
CHR01_RS000868635
chr1:1-4074542
868635
612
12
TGCGGCGTCTTCTTGTCCTTGATGTCGACGTTCACACGTTCCCGGCTGAG
CHR02FS001510537
chr2:1-3173005
1510537
614
12
CGAGCTGAACATCGGCTTCTTCAGCCGGATCGAGCGCGGCCGGCCGTGGA
CHR02_RS001347124
chr2:1-3173005
1347124
616
12
TCGTCGTGCAAGTCGGCCTCGACGGGCGCCGCGCGCCAGACCGGCTCGAG
CHR02_RS000620522
chr2:1-3173005
620522
618
12
GCAGGCGCGCATCGACGCTCGCAACCGCCGGCGCCGCCGCTTCGCATTCA
CHR02_RS002820625
chr2:1-3173005
2820625
620
12
ATCCACATTCCAACAAACGCGAAAAACAAGGCTGATGCGCGCCGCTTCCT
CHR02FS002919286
chr2:1-3173005
2919286
622
12
CGTGCAGCGCCACCAGCACCGCGATCGCGCCGGACAGCCCGGCCGTCATG
CHR02FS002199087
chr2:1-3173005
2199087
624
12
TCGCAGGAGCTGTCGGACACGCTGTCGAAAATCGACGGCGTCGTCGTCGC
CHR02FS001736920
chr2:1-3173005
1736920
626
12
GCCCGCGCGTCGGTGCGGGCGAACACCACCCACGCGTGCGCACGATCGGC
CHR01FS001676713
chr1:1-4074542
1676713
628
12
CTTCTGACATAAGGAAGATTCATGTTGCGGGCTATGTTTTGCGCCGCCGC
CHR02FS001174568
chr2:1-3173005
1174568
630
12
AACAAAACGACCGTTCAGACAGCCGACAGACGGTTGCGCGAAGCGTTCCT
CHR02FS001735972
chr2:1-3173005
1735972
632
12
TAGCGCCGTGCGAGCTCGAAGCTCTCGGGATGGGCCGCCGGGCCGGTCTC
CHR02FS001305475
chr2:1-3173005
1305475
634
12
GCAATGCAGGCCGAGACGTCCTGCGCGGATTTCTGGCTTTGTCCCACGTT
CHR01FS000404043
chr1:1-4074542
404043
636
12
GAAGCCGATCTGCGAGGACAGCAGTTTGGGAAAGTGATTCATCGTGCGCG
389307 37631 Kbytes .Supplementary file Size Download File type/resource GPL16432_071211_BPK96243_CO_Tiling.ndf.gz
19.7 Mb
(ftp) (http) NDF
GPL16432_071211_BPK96243_CO_Tiling.pos.gz
1.7 Mb
(ftp) (http) POS
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