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Platform GPL15626 Query DataSets for GPL15626
Status Public on Jul 31, 2012
Title Agilent-035843 Genotypic_EA519_Xenopus_tropicalis_GE_4x44k
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Xenopus tropicalis
Manufacturer Agilent
Manufacture protocol See manufacturer's web site at http://www.agilent.com/
 
 
Contributor(s) Langlois VS, Martyniuk CJ
Submission date May 29, 2012
Last update date Jul 31, 2012
Contact name Christopher Joseph Martyniuk
E-mail(s) CMARTYN@UFL.EDU
Organization name UF
Department Physiological Sciences
Street address CEHT Mowry Road
City Gainesville
State/province FL
ZIP/Postal code 32611
Country USA
 
Samples (84) GSM945721, GSM945722, GSM945723, GSM945724, GSM945725, GSM945726 
Series (6)
GSE38576 Gene regulatory networks involved in early embryonic Silurana tropicalis development
GSE40149 Effects of Disperse Yellow 7 in Silurana tropicalis Gene Network Analysis
GSE46366 The transcriptomic response to finasteride in the Silurana tropicalis testis

Data table header descriptions
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
GB_ACC
CHROMOSOMAL_LOCATION
DESCRIPTION
SEQUENCE
SPOT_ID

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE SPOT_ID
1 266 170 GE_BrightCorner GE_BrightCorner pos CONTROL
2 266 168 DarkCorner DarkCorner pos CONTROL
3 266 166 DarkCorner DarkCorner pos CONTROL
4 266 164 DarkCorner DarkCorner pos CONTROL
5 266 162 DarkCorner DarkCorner pos CONTROL
6 266 160 DarkCorner DarkCorner pos CONTROL
7 266 158 DarkCorner DarkCorner pos CONTROL
8 266 156 DarkCorner DarkCorner pos CONTROL
9 266 154 DarkCorner DarkCorner pos CONTROL
10 266 152 DarkCorner DarkCorner pos CONTROL
11 266 150 DarkCorner DarkCorner pos CONTROL
12 266 148 GT_EA519_mRNA_specific_007735 GT_EA519_mRNA_specific_007735 FALSE XM_002932315 unmapped "PREDICTED: uncharacterized protein C5orf4 homolog (LOC100496051), mRNA (Next best hit: XM_002934297, % identity : 94.74 , alignment length : 19 )" AGATCTGATGTTCAAGCAAACCAAGGCTTATGAAAGACACATTCTATTAATGAACCTTAC
13 266 146 GT_EA519_mRNA_specific_008611 GT_EA519_mRNA_specific_008611 FALSE XM_002933487 unmapped "PREDICTED: lecithin retinol acyltransferase-like (LOC100485002), mRNA (Next best hit: CT025163, % identity : 95.24 , alignment length : 21 )" GAAACACTAAAGAGGATTATCCGTGACCAGAGAAGCGTATTTGTTTCTGCGGCTTCAGGA
14 266 144 GT_EA519_mRNA_xhyb_006363 GT_EA519_mRNA_xhyb_006363 FALSE BC171166 unmapped "Xenopus tropicalis aldehyde dehydrogenase 1 family, member A2, mRNA (cDNA clone IMAGE:9040428), complete cds" TCCTGTATAGTTCCCTGCAGCTGCATTCTGCCAGCGATATCTTTAGGCATTATGTCAAGT
15 266 142 GT_EA519_mRNA_specific_007737 GT_EA519_mRNA_specific_007737 FALSE XM_002932322 unmapped "PREDICTED: olfactory receptor 11L1-like (LOC100497628), mRNA (Next best hit: XM_002943120, % identity : 83.33 , alignment length : 60 )" CAGATATTGGCAATGGCAACAGCTATACCTGTGATTCTTATCCCATTCATGCTCATCATT
16 266 140 GT_EA519_mRNA_xhyb_003984 GT_EA519_mRNA_xhyb_003984 FALSE NM_001045746 unmapped "Xenopus (Silurana) tropicalis 2-oxoglutarate and iron-dependent oxygenase domain containing 2 (ogfod2), mRNA" ACTAAGCTGTCGAACTTGCTGTCCTCGGTTCTTCCTCGCAAACATCCGTTGTTATAATTT
17 266 138 GT_EA519_mRNA_specific_010682 GT_EA519_mRNA_specific_010682 FALSE XM_002936329 unmapped "PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like (LOC100490486), mRNA (Next best hit: XM_002937276, % identity : 100.00 , alignment length : 17 )" TTTTCCATCATCAGAGGGCAAGCTCCGGGAAGTTTTGCTAGTTCTGAACAAGTCAGACTT
18 266 136 GT_EA519_mRNA_specific_015886 GT_EA519_mRNA_specific_015886 FALSE XM_002943926 unmapped "PREDICTED: ubiquitin-associated protein 2-like (LOC100486308), partial mRNA (Next best hit: AB513653, % identity : 100.00 , alignment length : 16 )" TTCTGCCCCCGTAACCGCCGACTCTCGAGCACTAATGTTTTTGTATGTTATGTGTACAAA
19 266 134 GT_EA519_mRNA_specific_010851 GT_EA519_mRNA_specific_010851 FALSE XM_002936551 unmapped "PREDICTED: metabotropic glutamate receptor 5-like (LOC100485273), mRNA (Next best hit: BC166945, % identity : 100.00 , alignment length : 15 )" GGCAACTCCGAGAGTAAGAATAAACGTCCCACTAATATAGAGCAGATGTCATATGAGTGG
20 266 132 GT_EA519_mRNA_specific_004446 GT_EA519_mRNA_specific_004446 FALSE BC161515 unmapped "integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51), mRNA (cDNA clone MGC:135638 IMAGE:7567807), complete cds (Next best hit: NM_001204092, % identity : 100.00 , alignment length : 17 )" TTCCTGACAACCGTCAACGTAATCGCCGTGATCTAACTGCAATGAATGGACATTTGCAGA

Total number of rows: 45220

Table truncated, full table size 12170 Kbytes.




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Supplementary data files not provided

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