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Status |
Public on Jul 31, 2012 |
Title |
Agilent-035843 Genotypic_EA519_Xenopus_tropicalis_GE_4x44k |
Technology type |
spotted oligonucleotide |
Distribution |
custom-commercial |
Organism |
Xenopus tropicalis |
Manufacturer |
Agilent |
Manufacture protocol |
See manufacturer's web site at http://www.agilent.com/
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Contributor(s) |
Langlois VS, Martyniuk CJ |
Submission date |
May 29, 2012 |
Last update date |
Jul 31, 2012 |
Contact name |
Christopher Joseph Martyniuk |
E-mail(s) |
CMARTYN@UFL.EDU
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Organization name |
UF
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Department |
Physiological Sciences
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Street address |
CEHT Mowry Road
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City |
Gainesville |
State/province |
FL |
ZIP/Postal code |
32611 |
Country |
USA |
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Samples (84)
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GSM945721, GSM945722, GSM945723, GSM945724, GSM945725, GSM945726
GSM945727, GSM945728, GSM945729, GSM945730, GSM945731, GSM945732, GSM945733, GSM945734, GSM945735, GSM945736, GSM986294, GSM986295, GSM986296, GSM986297, GSM986298, GSM986299, GSM986300, GSM986301, GSM1129246, GSM1129247, GSM1129248, GSM1129249, GSM1129250, GSM1129251, GSM1129252, GSM1129253, GSM1386529, GSM1386530, GSM1386531, GSM1386532, GSM1386533, GSM1386534, GSM1386535, GSM1386536, GSM1386537, GSM1386538, GSM1386539, GSM1386540, GSM1386541, GSM1386542, GSM1386543, GSM1386544, GSM1386545, GSM1386546, GSM1386547, GSM1386548, GSM1386549, GSM1386550, GSM1386551, GSM1386552, GSM1386553, GSM1386554, GSM1386555, GSM1386556, GSM1386557, GSM1386558, GSM1386559, GSM1386560, GSM1386561, GSM1386562, GSM1386563, GSM1386564, GSM1386565, GSM1386566, GSM1386567, GSM1386568, GSM3346196, GSM3346197, GSM3346198, GSM3346199, GSM3346200, GSM3346201, GSM3346202, GSM3346203, GSM3346204, GSM3346205, GSM3346206, GSM3346207
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Series (6)
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GSE38576 |
Gene regulatory networks involved in early embryonic Silurana tropicalis development |
GSE40149 |
Effects of Disperse Yellow 7 in Silurana tropicalis Gene Network Analysis |
GSE46366 |
The transcriptomic response to finasteride in the Silurana tropicalis testis |
GSE57673 |
The effects of arsenic on Silurana tropicalis embryos |
GSE57675 |
The effects of phthalates on S. tropicalis development |
GSE118736 |
Gene expression profiling in Silurana (Xenopus) tropicalis exposed to mixtures of naphthenic acids |
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Data table header descriptions |
ID |
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COL |
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ROW |
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NAME |
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SPOT_ID |
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CONTROL_TYPE |
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GB_ACC |
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CHROMOSOMAL_LOCATION |
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DESCRIPTION |
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SEQUENCE |
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SPOT_ID |
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Data table |
ID |
COL |
ROW |
NAME |
SPOT_ID |
CONTROL_TYPE |
GB_ACC |
CHROMOSOMAL_LOCATION |
DESCRIPTION |
SEQUENCE |
SPOT_ID |
1 |
266 |
170 |
GE_BrightCorner |
GE_BrightCorner |
pos |
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CONTROL |
2 |
266 |
168 |
DarkCorner |
DarkCorner |
pos |
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|
|
|
CONTROL |
3 |
266 |
166 |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
CONTROL |
4 |
266 |
164 |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
CONTROL |
5 |
266 |
162 |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
CONTROL |
6 |
266 |
160 |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
CONTROL |
7 |
266 |
158 |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
CONTROL |
8 |
266 |
156 |
DarkCorner |
DarkCorner |
pos |
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|
|
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CONTROL |
9 |
266 |
154 |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
CONTROL |
10 |
266 |
152 |
DarkCorner |
DarkCorner |
pos |
|
|
|
|
CONTROL |
11 |
266 |
150 |
DarkCorner |
DarkCorner |
pos |
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|
CONTROL |
12 |
266 |
148 |
GT_EA519_mRNA_specific_007735 |
GT_EA519_mRNA_specific_007735 |
FALSE |
XM_002932315 |
unmapped |
"PREDICTED: uncharacterized protein C5orf4 homolog (LOC100496051), mRNA (Next best hit: XM_002934297, % identity : 94.74 , alignment length : 19 )" |
AGATCTGATGTTCAAGCAAACCAAGGCTTATGAAAGACACATTCTATTAATGAACCTTAC |
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13 |
266 |
146 |
GT_EA519_mRNA_specific_008611 |
GT_EA519_mRNA_specific_008611 |
FALSE |
XM_002933487 |
unmapped |
"PREDICTED: lecithin retinol acyltransferase-like (LOC100485002), mRNA (Next best hit: CT025163, % identity : 95.24 , alignment length : 21 )" |
GAAACACTAAAGAGGATTATCCGTGACCAGAGAAGCGTATTTGTTTCTGCGGCTTCAGGA |
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14 |
266 |
144 |
GT_EA519_mRNA_xhyb_006363 |
GT_EA519_mRNA_xhyb_006363 |
FALSE |
BC171166 |
unmapped |
"Xenopus tropicalis aldehyde dehydrogenase 1 family, member A2, mRNA (cDNA clone IMAGE:9040428), complete cds" |
TCCTGTATAGTTCCCTGCAGCTGCATTCTGCCAGCGATATCTTTAGGCATTATGTCAAGT |
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15 |
266 |
142 |
GT_EA519_mRNA_specific_007737 |
GT_EA519_mRNA_specific_007737 |
FALSE |
XM_002932322 |
unmapped |
"PREDICTED: olfactory receptor 11L1-like (LOC100497628), mRNA (Next best hit: XM_002943120, % identity : 83.33 , alignment length : 60 )" |
CAGATATTGGCAATGGCAACAGCTATACCTGTGATTCTTATCCCATTCATGCTCATCATT |
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16 |
266 |
140 |
GT_EA519_mRNA_xhyb_003984 |
GT_EA519_mRNA_xhyb_003984 |
FALSE |
NM_001045746 |
unmapped |
"Xenopus (Silurana) tropicalis 2-oxoglutarate and iron-dependent oxygenase domain containing 2 (ogfod2), mRNA" |
ACTAAGCTGTCGAACTTGCTGTCCTCGGTTCTTCCTCGCAAACATCCGTTGTTATAATTT |
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17 |
266 |
138 |
GT_EA519_mRNA_specific_010682 |
GT_EA519_mRNA_specific_010682 |
FALSE |
XM_002936329 |
unmapped |
"PREDICTED: tRNA modification GTPase GTPBP3, mitochondrial-like (LOC100490486), mRNA (Next best hit: XM_002937276, % identity : 100.00 , alignment length : 17 )" |
TTTTCCATCATCAGAGGGCAAGCTCCGGGAAGTTTTGCTAGTTCTGAACAAGTCAGACTT |
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18 |
266 |
136 |
GT_EA519_mRNA_specific_015886 |
GT_EA519_mRNA_specific_015886 |
FALSE |
XM_002943926 |
unmapped |
"PREDICTED: ubiquitin-associated protein 2-like (LOC100486308), partial mRNA (Next best hit: AB513653, % identity : 100.00 , alignment length : 16 )" |
TTCTGCCCCCGTAACCGCCGACTCTCGAGCACTAATGTTTTTGTATGTTATGTGTACAAA |
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19 |
266 |
134 |
GT_EA519_mRNA_specific_010851 |
GT_EA519_mRNA_specific_010851 |
FALSE |
XM_002936551 |
unmapped |
"PREDICTED: metabotropic glutamate receptor 5-like (LOC100485273), mRNA (Next best hit: BC166945, % identity : 100.00 , alignment length : 15 )" |
GGCAACTCCGAGAGTAAGAATAAACGTCCCACTAATATAGAGCAGATGTCATATGAGTGG |
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20 |
266 |
132 |
GT_EA519_mRNA_specific_004446 |
GT_EA519_mRNA_specific_004446 |
FALSE |
BC161515 |
unmapped |
"integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51), mRNA (cDNA clone MGC:135638 IMAGE:7567807), complete cds (Next best hit: NM_001204092, % identity : 100.00 , alignment length : 17 )" |
TTCCTGACAACCGTCAACGTAATCGCCGTGATCTAACTGCAATGAATGGACATTTGCAGA |
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Total number of rows: 45220
Table truncated, full table size 12170 Kbytes.
Supplementary data files not provided |
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