GEO help: Mouse over screen elements for information.
Status
Public on Feb 27, 2013
Title
Agilent-026817 University_Surrey_HumanSleep_44k_v1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent
Manufacture protocol
Agilent Ink-jet in situ synthesised technology
Submission date
Mar 08, 2012
Last update date
Feb 27, 2013
Contact name
Emma Laing
E-mail(s)
e.laing@surrey.ac.uk Organization name
University of Surrey
Street address
Stag Hill
City
Guildford
ZIP/Postal code
GU22 7XH
Country
United Kingdom
Samples (830)
GSM968833 , GSM968834 , GSM968835 , GSM968836 , GSM968837 , GSM968838
GSM968839 ,
GSM968840 ,
GSM968841 ,
GSM968842 ,
GSM968843 ,
GSM968844 ,
GSM968845 ,
GSM968846 ,
GSM968847 ,
GSM968848 ,
GSM968849 ,
GSM968850 ,
GSM968851 ,
GSM968852 ,
GSM968853 ,
GSM968854 ,
GSM968855 ,
GSM968856 ,
GSM968857 ,
GSM968858 ,
GSM968859 ,
GSM968860 ,
GSM968861 ,
GSM968862 ,
GSM968863 ,
GSM968864 ,
GSM968865 ,
GSM968866 ,
GSM968867 ,
GSM968868 ,
GSM968869 ,
GSM968870 ,
GSM968871 ,
GSM968872 ,
GSM968873 ,
GSM968874 ,
GSM968875 ,
GSM968876 ,
GSM968877 ,
GSM968878 ,
GSM968879 ,
GSM968880 ,
GSM968881 ,
GSM968882 ,
GSM968883 ,
GSM968884 ,
GSM968885 ,
GSM968886 ,
GSM968887 ,
GSM968888 ,
GSM968889 ,
GSM968890 ,
GSM968891 ,
GSM968892 ,
GSM968893 ,
GSM968894 ,
GSM968895 ,
GSM968896 ,
GSM968897 ,
GSM968898 ,
GSM968899 ,
GSM968900 ,
GSM968901 ,
GSM968902 ,
GSM968903 ,
GSM968904 ,
GSM968905 ,
GSM968906 ,
GSM968907 ,
GSM968908 ,
GSM968909 ,
GSM968910 ,
GSM968911 ,
GSM968912 ,
GSM968913 ,
GSM968914 ,
GSM968915 ,
GSM968916 ,
GSM968917 ,
GSM968918 ,
GSM968919 ,
GSM968920 ,
GSM968921 ,
GSM968922 ,
GSM968923 ,
GSM968924 ,
GSM968925 ,
GSM968926 ,
GSM968927 ,
GSM968928 ,
GSM968929 ,
GSM968930 ,
GSM968931 ,
GSM968932 ,
GSM968933 ,
GSM968934 ,
GSM968935 ,
GSM968936 ,
GSM968937 ,
GSM968938 ,
GSM968939 ,
GSM968940 ,
GSM968941 ,
GSM968942 ,
GSM968943 ,
GSM968944 ,
GSM968945 ,
GSM968946 ,
GSM968947 ,
GSM968948 ,
GSM968949 ,
GSM968950 ,
GSM968951 ,
GSM968952 ,
GSM968953 ,
GSM968954 ,
GSM968955 ,
GSM968956 ,
GSM968957 ,
GSM968958 ,
GSM968959 ,
GSM968960 ,
GSM968961 ,
GSM968962 ,
GSM968963 ,
GSM968964 ,
GSM968965 ,
GSM968966 ,
GSM968967 ,
GSM968968 ,
GSM968969 ,
GSM968970 ,
GSM968971 ,
GSM968972 ,
GSM968973 ,
GSM968974 ,
GSM968975 ,
GSM968976 ,
GSM968977 ,
GSM968978 ,
GSM968979 ,
GSM968980 ,
GSM968981 ,
GSM968982 ,
GSM968983 ,
GSM968984 ,
GSM968985 ,
GSM968986 ,
GSM968987 ,
GSM968988 ,
GSM968989 ,
GSM968990 ,
GSM968991 ,
GSM968992 ,
GSM968993 ,
GSM968994 ,
GSM968995 ,
GSM968996 ,
GSM968997 ,
GSM968998 ,
GSM968999 ,
GSM969000 ,
GSM969001 ,
GSM969002 ,
GSM969003 ,
GSM969004 ,
GSM969005 ,
GSM969006 ,
GSM969007 ,
GSM969008 ,
GSM969009 ,
GSM969010 ,
GSM969011 ,
GSM969012 ,
GSM969013 ,
GSM969014 ,
GSM969015 ,
GSM969016 ,
GSM969017 ,
GSM969018 ,
GSM969019 ,
GSM969020 ,
GSM969021 ,
GSM969022 ,
GSM969023 ,
GSM969024 ,
GSM969025 ,
GSM969026 ,
GSM969027 ,
GSM969028 ,
GSM969029 ,
GSM969030 ,
GSM969031 ,
GSM969032 ,
GSM969033 ,
GSM969034 ,
GSM969035 ,
GSM969036 ,
GSM969037 ,
GSM969038 ,
GSM969039 ,
GSM969040 ,
GSM969041 ,
GSM969042 ,
GSM969043 ,
GSM969044 ,
GSM969045 ,
GSM969046 ,
GSM969047 ,
GSM969048 ,
GSM969049 ,
GSM969050 ,
GSM969051 ,
GSM969052 ,
GSM969053 ,
GSM969054 ,
GSM969055 ,
GSM969056 ,
GSM969057 ,
GSM969058 ,
GSM969059 ,
GSM969060 ,
GSM969061 ,
GSM969062 ,
GSM969063 ,
GSM969064 ,
GSM969065 ,
GSM969066 ,
GSM969067 ,
GSM969068 ,
GSM969069 ,
GSM969070 ,
GSM969071 ,
GSM969072 ,
GSM969073 ,
GSM969074 ,
GSM969075 ,
GSM969076 ,
GSM969077 ,
GSM969078 ,
GSM969079 ,
GSM969080 ,
GSM969081 ,
GSM969082 ,
GSM969083 ,
GSM969084 ,
GSM969085 ,
GSM969086 ,
GSM969087 ,
GSM969088 ,
GSM969089 ,
GSM969090 ,
GSM969091 ,
GSM969092 ,
GSM969093 ,
GSM969094 ,
GSM969095 ,
GSM969096 ,
GSM969097 ,
GSM969098 ,
GSM969099 ,
GSM969100 ,
GSM969101 ,
GSM969102 ,
GSM969103 ,
GSM969104 ,
GSM969105 ,
GSM969106 ,
GSM969107 ,
GSM969108 ,
GSM969109 ,
GSM969110 ,
GSM969111 ,
GSM969112 ,
GSM969113 ,
GSM969114 ,
GSM969115 ,
GSM969116 ,
GSM969117 ,
GSM969118 ,
GSM969119 ,
GSM969120 ,
GSM969121 ,
GSM969122 ,
GSM969123 ,
GSM969124 ,
GSM969125 ,
GSM969126 ,
GSM969127 ,
GSM969128 ,
GSM969129 ,
GSM969130 ,
GSM969131 ,
GSM969132 ,
GSM969133 ,
GSM969134 ,
GSM969135 ,
GSM969136 ,
GSM969137 ,
GSM969138 ,
GSM969139 ,
GSM969140 ,
GSM969141 ,
GSM969142 ,
GSM969143 ,
GSM969144 ,
GSM969145 ,
GSM969146 ,
GSM969147 ,
GSM969148 ,
GSM969149 ,
GSM969150 ,
GSM969151 ,
GSM969152 ,
GSM969153 ,
GSM969154 ,
GSM969155 ,
GSM969156 ,
GSM969157 ,
GSM969158 ,
GSM969159 ,
GSM969160 ,
GSM969161 ,
GSM969162 ,
GSM969163 ,
GSM969164 ,
GSM969165 ,
GSM969166 ,
GSM969167 ,
GSM969168 ,
GSM969169 ,
GSM969170 ,
GSM969171 ,
GSM969172 ,
GSM969173 ,
GSM969174 ,
GSM969175 ,
GSM969176 ,
GSM969177 ,
GSM969178 ,
GSM969179 ,
GSM969180 ,
GSM969181 ,
GSM969182 ,
GSM969183 ,
GSM969184 ,
GSM969185 ,
GSM969186 ,
GSM969187 ,
GSM969188 ,
GSM969189 ,
GSM969190 ,
GSM969191 ,
GSM969192 ,
GSM969193 ,
GSM969194 ,
GSM969195 ,
GSM969196 ,
GSM969197 ,
GSM969198 ,
GSM969199 ,
GSM969200 ,
GSM969201 ,
GSM969202 ,
GSM969203 ,
GSM969204 ,
GSM969205 ,
GSM969206 ,
GSM969207 ,
GSM969208 ,
GSM969209 ,
GSM969210 ,
GSM969211 ,
GSM969212 ,
GSM969213 ,
GSM969214 ,
GSM969215 ,
GSM969216 ,
GSM969217 ,
GSM969218 ,
GSM969219 ,
GSM969220 ,
GSM969221 ,
GSM969222 ,
GSM969223 ,
GSM969224 ,
GSM969225 ,
GSM969226 ,
GSM969227 ,
GSM969228 ,
GSM969229 ,
GSM969230 ,
GSM969231 ,
GSM969232 ,
GSM969233 ,
GSM969234 ,
GSM969235 ,
GSM969236 ,
GSM969237 ,
GSM969238 ,
GSM969239 ,
GSM969240 ,
GSM969241 ,
GSM969242 ,
GSM969243 ,
GSM969244 ,
GSM969245 ,
GSM969246 ,
GSM969247 ,
GSM969248 ,
GSM969249 ,
GSM969250 ,
GSM969251 ,
GSM969252 ,
GSM969253 ,
GSM969254 ,
GSM969255 ,
GSM969256 ,
GSM969257 ,
GSM969258 ,
GSM969259 ,
GSM1168586 ,
GSM1168587 ,
GSM1168588 ,
GSM1168589 ,
GSM1168590 ,
GSM1168591 ,
GSM1168592 ,
GSM1168593 ,
GSM1168594 ,
GSM1168595 ,
GSM1168596 ,
GSM1168597 ,
GSM1168598 ,
GSM1168599 ,
GSM1168600 ,
GSM1168601 ,
GSM1168602 ,
GSM1168603 ,
GSM1168604 ,
GSM1168605 ,
GSM1168606 ,
GSM1168607 ,
GSM1168608 ,
GSM1168609 ,
GSM1168610 ,
GSM1168611 ,
GSM1168612 ,
GSM1168613 ,
GSM1168614 ,
GSM1168615 ,
GSM1168616 ,
GSM1168617 ,
GSM1168618 ,
GSM1168619 ,
GSM1168620 ,
GSM1168621 ,
GSM1168622 ,
GSM1168623 ,
GSM1168624 ,
GSM1168625 ,
GSM1168626 ,
GSM1168627 ,
GSM1168628 ,
GSM1168629 ,
GSM1168630 ,
GSM1168631 ,
GSM1168632 ,
GSM1168633 ,
GSM1168634 ,
GSM1168635 ,
GSM1168636 ,
GSM1168637 ,
GSM1168638 ,
GSM1168639 ,
GSM1168640 ,
GSM1168641 ,
GSM1168642 ,
GSM1168643 ,
GSM1168644 ,
GSM1168645 ,
GSM1168646 ,
GSM1168647 ,
GSM1168648 ,
GSM1168649 ,
GSM1168650 ,
GSM1168651 ,
GSM1168652 ,
GSM1168653 ,
GSM1168654 ,
GSM1168655 ,
GSM1168656 ,
GSM1168657 ,
GSM1168658 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (5)
GSE39445 Effect of sleep restriction on the human transcriptome during extended wakefulness
GSE48113 Mistimed sleep disrupts circadian regulation of the human blood transcriptome
GSE82113 Mistimed sleep disrupts circadian regulation of the human blood transcriptome - Heterozygotes
GSE82114 The human blood transcriptome following sleep extension and sleep restriction: Heterozygote samples
GSE87761 Identifying circadian transcripts in human subcutaneous adipose tissue
Data table header descriptions ID COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocusLinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID Unigene ID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GOIDs
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
A_23_P67299
A_23_P67299
FALSE
NM_020812 NM_020812 57572
DOCK6
dedicator of cytokinesis 6
Hs.591002
ENST00000294618
ref|NM_020812|ens|ENST00000294618|ens|ENST00000319867|gb|AB384597
chr19:11311405-11311100
hs|19p13.2
Homo sapiens dedicator of cytokinesis 6 (DOCK6), mRNA [NM_020812]
GO:0005085(guanyl-nucleotide exchange factor activity)|GO:0005525(GTP binding)|GO:0005829(cytosol)|GO:0007596(blood coagulation)|GO:0051020(GTPase binding)
GACTTCTGCAAGAAATGTGAGGATGCGCTGCGGAAAAATAAGGCCCTGATTGGGCCGGAC
13
266
146
A_23_P49021
A_23_P49021
FALSE
NM_025234 NM_025234 80349
WDR61
WD repeat domain 61
Hs.513055
ENST00000267973
ref|NM_025234|ens|ENST00000267973|gb|CR457333|gb|AF309553
chr15:78580666-78578452
hs|15q25.1
Homo sapiens WD repeat domain 61 (WDR61), mRNA [NM_025234]
GO:0005515(protein binding)
TGCTTCAGATGATGGCTACATCAAGATCTATGATGTACAACATGCCAATTTGGCTGGCAC
14
266
144
A_24_P315975
A_24_P315975
FALSE
NM_001146041 NM_001146041 100132386
KRTAP4-9
keratin associated protein 4-9
Hs.307018
ENST00000391415
ref|NM_001146041|ens|ENST00000391415|gb|AJ406941
chr17:39262537-39262596
hs|17q21.2
Homo sapiens keratin associated protein 4-9 (KRTAP4-9), mRNA [NM_001146041]
GO:0045095(keratin filament)
ATCCTCTAATTTCCTCATTTTCTTTATCACTTTGAGGTACAGATCTTCTTCTCAGTGAGG
15
266
142
A_24_P109191
A_24_P109191
FALSE
ENST00000261752
ens|ENST00000261752
chr20:10594352-10594293
hs|20p12.2
TCCCATCCTATAACGCCTTTGTCAAAGAATCAACACAAAAGATGAATGCAAAGAAAAGGA
16
266
140
AT_nD_3
AT_nD_3
pos
17
266
138
A_24_P269814
A_24_P269814
FALSE
NM_001001974 NM_001001974 59338
PLEKHA1
pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
Hs.643512
ENST00000368988
ref|NM_001001974|ref|NM_001195608|ref|NM_021622|ens|ENST00000368988
chr10:124191798-124191857
hs|10q26.13
Homo sapiens pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 (PLEKHA1), transcript variant 2, mRNA [NM_001001974]
GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0005730(nucleolus)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0008289(lipid binding)|GO:0014065(phosphatidylinositol 3-kinase cascade)|GO:0030165(PDZ domain binding)|GO:0031529(ruffle organization)|GO:0032587(ruffle membrane)|GO:0043325(phosphatidylinositol-3,4-bisphosphate binding)|GO:0045184(establishment of protein localization)|GO:0050853(B cell receptor signaling pathway)|GO:0051898(negative regulation of protein kinase B signaling cascade)|GO:0070301(cellular response to hydrogen peroxide)
GTGTGTTATCTTTATATGTCAAACTGGTTGAACACTGTAATGAGAATAAACTGCACAGAG
18
266
136
A_23_P121413
A_23_P121413
FALSE
NM_153330 NM_153330 165721
DNAJB8
DnaJ (Hsp40) homolog, subfamily B, member 8
Hs.518241
ENST00000319153
ref|NM_153330|ens|ENST00000319153|ens|ENST00000469083|gb|AK126068
chr3:128181356-128181297
hs|3q21.3
Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 8 (DNAJB8), mRNA [NM_153330]
GO:0006457(protein folding)|GO:0031072(heat shock protein binding)|GO:0051082(unfolded protein binding)
ACCACCGTGCATGGGGCAGCAAACACGTGGGGCCGCAGACATAGCCTGATGGTTAATAAA
19
266
134
A_24_P186204
A_24_P186204
FALSE
NM_182503 NM_182503 134637
ADAT2
adenosine deaminase, tRNA-specific 2
Hs.709561
ENST00000237283
ref|NM_182503|ens|ENST00000237283|ens|ENST00000367594|gb|CR616838
chr6:143748336-143748277
hs|6q24.2
Homo sapiens adenosine deaminase, tRNA-specific 2 (ADAT2), mRNA [NM_182503]
GO:0008033(tRNA processing)|GO:0008270(zinc ion binding)|GO:0016787(hydrolase activity)|GO:0046872(metal ion binding)
ATATTGCTGAGAGTAGCAGCTAATCACAGTTACATGCTTCAGAGGACTTATAATTGCTTG
20
266
132
A_24_P73290
A_24_P73290
FALSE
NM_001681 NM_001681 488
ATP2A2
ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
Hs.506759
ENST00000313432
ref|NM_001681|ref|NM_170665|ens|ENST00000313432|ens|ENST00000395494
chr12:110788669-110788728
hs|12q24.11
Homo sapiens ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 (ATP2A2), transcript variant 2, mRNA [NM_001681]
GO:0000166(nucleotide binding)|GO:0002026(regulation of the force of heart contraction)|GO:0005388(calcium-transporting ATPase activity)|GO:0005509(calcium ion binding)|GO:0005515(protein binding)|GO:0005524(ATP binding)|GO:0005624(membrane fraction)|GO:0005789(endoplasmic reticulum membrane)|GO:0005792(microsome)|GO:0005887(integral to plasma membrane)|GO:0006754(ATP biosynthetic process)|GO:0006810(transport)|GO:0006812(cation transport)|GO:0006874(cellular calcium ion homeostasis)|GO:0006984(ER-nucleus signaling pathway)|GO:0007155(cell adhesion)|GO:0007596(blood coagulation)|GO:0008022(protein C-terminus binding)|GO:0008544(epidermis development)|GO:0016020(membrane)|GO:0016529(sarcoplasmic reticulum)|GO:0016787(hydrolase activity)|GO:0030168(platelet activation)|GO:0031095(platelet dense tubular network membrane)|GO:0031775(lutropin-choriogonadotropic hormone receptor binding)|GO:0033017(sarcoplasmic reticulum membrane)|GO:0034220(ion transmembrane transport)|GO:0043234(protein complex)|GO:0043434(response to peptide hormone stimulus)|GO:0045822(negative regulation of heart contraction)|GO:0048155(S100 alpha binding)|GO:0055085(transmembrane transport)|GO:0070296(sarcoplasmic reticulum calcium ion transport)
CGCACTGTATTAAATGTAACTTATTTAATGAAATCAGAAGCAGTAGACAGATGTTGGTGC
45220 24765 Kbytes .Supplementary data files not provided
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