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| Status |
Public on May 03, 2010 |
| Title |
Agilent-015210 Benfey/Cui Arabidopsis custom whole genome promoter array 244k v1.0 |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Arabidopsis thaliana |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
see manufacturer's web site at http://www.agilent.com/
|
| |
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| |
|
| Submission date |
Apr 14, 2010 |
| Last update date |
Jul 07, 2015 |
| Contact name |
Hongchang Cui |
| E-mail(s) |
hcui@bio.fsu.edu
|
| Phone |
850-645-1967
|
| Fax |
850-645-8447
|
| URL |
http://www.bio.fsu.edu/faculty-cui.php
|
| Organization name |
Florida State University
|
| Department |
Biological Science
|
| Street address |
319 Stadium Dr.
|
| City |
Tallahassee |
| State/province |
FL |
| ZIP/Postal code |
32306 |
| Country |
USA |
| |
|
| Samples (26)
|
GSM533278, GSM533279, GSM539801, GSM539802, GSM539803, GSM539804
GSM542266, GSM542267, GSM542268, GSM542269, GSM745469, GSM745470, GSM745471, GSM745472, GSM1811385, GSM1811386, GSM1811387, GSM1811388, GSM2787677, GSM2787678, GSM2787679, GSM2787680, GSM2787681, GSM2787682, GSM2787683, GSM2787684
|
| Series (7)
|
| GSE21338 |
Genome-wide Identification of SHR Direct Targets Using a Custom Agilent Promoter Array |
| GSE21625 |
The novel transcription factor, POPEYE, regulates response to iron deficiency in Arabidopsis roots |
| GSE21741 |
Transcriptional regulation of ROS controls the transition from proliferation to differentiation in the root |
| GSE30104 |
Genome-wide identification of SCARECROW (SCR) direct targets using a custom Agilent promoter array |
| GSE30166 |
Cell-type, developmental stage, and whole root responses to low pH and sulfur deficiency |
| GSE70595 |
Identification of ARR1 targets in the root of Arabidopsis thaliana |
| GSE104010 |
Genome-wide biding assay of GTL1 and DF1 |
|
| Data table header descriptions |
| ID |
|
| Row |
|
| Col |
|
| SubTypeMask |
|
| SubTypeName |
|
| Start |
|
| SEQUENCE |
|
| ProbeUID |
|
| ControlType |
|
| ProbeName |
|
| GeneName |
|
| RANGE_GB |
|
| RANGE_START |
|
| RANGE_END |
|
| SPOT_ID |
|
| Data table |
| ID |
Row |
Col |
SubTypeMask |
SubTypeName |
Start |
SEQUENCE |
ProbeUID |
ControlType |
ProbeName |
GeneName |
RANGE_GB |
RANGE_START |
RANGE_END |
SPOT_ID |
| 1 |
1 |
1 |
0 |
|
0 |
GGTTTGATGAGTAAAATGAGTTGGGTTGTAATGGTTAATGGTTTCAATGGTTTACCCAAT |
0 |
1 |
AtCGHBrightCorner |
AtCGHBrightCorner |
|
|
|
--AtCGHBrightCorner |
| 2 |
1 |
2 |
66 |
Structural |
0 |
GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG |
1 |
1 |
DarkCorner |
DarkCorner |
|
|
|
--DarkCorner |
| 3 |
1 |
3 |
66 |
Structural |
0 |
GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG |
1 |
1 |
DarkCorner |
DarkCorner |
|
|
|
--DarkCorner |
| 4 |
1 |
4 |
0 |
|
0 |
TGTAAATAGTTATAACAAGATAAGTAATATAACTTATTAATAGAATTTGAACTAAAGCCA |
3 |
0 |
A_85_P00723145 |
Chr5:000082256-000082315 |
NC_003076.1 |
82256 |
82315 |
|
| 5 |
1 |
5 |
0 |
|
0 |
GGTGAAACGATCACAAAGCAAATTGAGGGATAGAGAAGCAAACAGAAAGAGAAGAAGATA |
5 |
0 |
A_85_P00320548 |
Chr2:011058960-011059016 |
NC_003071.1 |
11058960 |
11059016 |
|
| 6 |
1 |
6 |
0 |
|
0 |
GTCTTTTAACTCGTACGTATGATTTAACCAATCAAAAATATATCGTATTTTTTTTACACC |
7 |
0 |
A_85_P00129115 |
Chr1:017064307-017064366 |
NC_003070.1 |
17064307 |
17064366 |
|
| 7 |
1 |
7 |
0 |
|
0 |
ATCGTCTAATACAATGAAATTTCATCAAAATAATTATTTTTCTATAAATTATGATGATCT |
9 |
0 |
A_85_P00521054 |
Chr3:016765098-016765157 |
NC_003074.1 |
16765098 |
16765157 |
|
| 8 |
1 |
8 |
0 |
|
0 |
ACAAAGATATCATCTACATTCTATTTTTGTGCTGTAACTTTTCTGAATTTTTTGTAAACA |
11 |
0 |
A_85_P00191881 |
Chr1:024357907-024357966 |
NC_003070.1 |
24357907 |
24357966 |
|
| 9 |
1 |
9 |
0 |
|
0 |
CCAAAAAAAAAAAAAAAAGATTGCTCGGAGAAGTAGAGGTGTTCCCCAATGTTTCAAAAT |
13 |
0 |
A_85_P00855706 |
Chr5:017714713-017714772 |
NC_003076.1 |
17714713 |
17714772 |
|
| 10 |
1 |
10 |
0 |
|
0 |
ACTTTTGAAAAACAGTTATTATCGTAAGTTTATGACAATAATGGCAGGTAAAAACAAATA |
15 |
0 |
A_85_P00817069 |
Chr5:011467064-011467123 |
NC_003076.1 |
11467064 |
11467123 |
|
| 11 |
1 |
11 |
0 |
|
0 |
CGACGTTAGCTAACTTAGCTTACACGCCTGCTTGTTTTTCTTCTATAGTTTCGTTGTAAT |
17 |
0 |
A_85_P00332242 |
Chr2:012392746-012392805 |
NC_003071.1 |
12392746 |
12392805 |
|
| 12 |
1 |
12 |
0 |
|
0 |
TAATCACATCAAGTCGTACACGTCTCCAAATCACGAAACTGACGGACAAAAGATAACCGA |
19 |
0 |
A_85_P00205971 |
Chr1:025945259-025945310 |
NC_003070.1 |
25945259 |
25945310 |
|
| 13 |
1 |
13 |
0 |
|
0 |
TGGAGGACAAAAACTAGCTAGTTGGTGAAAATGGATATCTACAATTACCTTCTAGCTAGC |
21 |
0 |
A_85_P00324805 |
Chr2:011550335-011550394 |
NC_003071.1 |
11550335 |
11550394 |
|
| 14 |
1 |
14 |
0 |
|
0 |
TGTTGAAAAAAAATCTAAATAAGTATTAATGTAATATAACAAAAAGATATAATTGAATGG |
23 |
0 |
A_85_P00844169 |
Chr5:016348568-016348627 |
NC_003076.1 |
16348568 |
16348627 |
|
| 15 |
1 |
15 |
0 |
|
0 |
GAGAATATACAGTTGGAATCAAAGATATAAATTACAAATATCATTAAAAGTCTGAAGACA |
25 |
0 |
A_85_P00302089 |
Chr2:008898834-008898893 |
NC_003071.1 |
8898834 |
8898893 |
|
| 16 |
1 |
16 |
0 |
|
0 |
AGAGTAGAATGACTCAAAAATGATTTCTTTTGATTCAATTATATGCGATTGTTAATGTCT |
27 |
0 |
A_85_P00671250 |
Chr4:012865081-012865140 |
NC_003075.1 |
12865081 |
12865140 |
|
| 17 |
1 |
17 |
0 |
|
0 |
GTTTCAGGAATCTCCAGAGTTCATCATGTCCTACTAAATGACAAAACCCTTTACAAAAAG |
29 |
0 |
A_85_P00674113 |
Chr4:013183715-013183774 |
NC_003075.1 |
13183715 |
13183774 |
|
| 18 |
1 |
18 |
0 |
|
0 |
ACTCCACAATTCTTCTCATTAGACATATAAAAGTAAAAATAACTTCCGTTTCGAAATCTC |
31 |
0 |
A_85_P00463668 |
Chr3:007474346-007474405 |
NC_003074.1 |
7474346 |
7474405 |
|
| 19 |
1 |
19 |
0 |
|
0 |
GGGGTAACTGATGAGAGAAGAAGAGTCTAATATTCACACTTGCATGTTGATATTGACTCT |
33 |
0 |
A_85_P00582338 |
Chr4:000304472-000304531 |
NC_003075.1 |
304472 |
304531 |
|
| 20 |
1 |
20 |
0 |
|
0 |
AGAAAAGAGCAAAGGTAAAAGCTCATAAGTCCTAAGTGACGAAAGAAATTTACATATACA |
35 |
0 |
A_85_P00293446 |
Chr2:007888647-007888706 |
NC_003071.1 |
7888647 |
7888706 |
|
Total number of rows: 243504
Table truncated, full table size 37586 Kbytes.
| Supplementary data files not provided |
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