LOC100485515 proteasomal ATPase-associated factor 1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: LOC100485515provided by Xenbase
Official Full Name: proteasomal ATPase-associated factor 1provided by Xenbase
Primary source: Xenbase:XB-GENE-29077851
See related: Ensembl:ENSXETG00000037004
Gene type: protein coding
RefSeq status: MODEL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

Location:: chromosome: 2

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	2	NC_030678.2 (174274414..174318978, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	Unplaced Scaffold	NW_016683507.1 (101598..144282)

Chromosome 2 - NC_030678.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

Gene Ontology Provided by Xenbase

Component	Evidence Code	Pubs
part_of proteasome complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: proteasomal ATPase-associated factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

174274414..174318978 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031896306.1 → XP_031752166.1 proteasomal ATPase-associated factor 1 isoform X3

UniProtKB/TrEMBL

A0A803JI03, A0A8J1J684

Related

ENSXETP00000107549.1, ENSXETT00000105798.1

Conserved Domains (2) summary

sd00039
Location:98 → 135

7WD40; WD40 repeat [structural motif]

cl29593
Location:94 → 306

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896313.1 → XP_031752173.1 proteasomal ATPase-associated factor 1 isoform X7

UniProtKB/TrEMBL

A0A8J1J2U4, Q0VFH5

Conserved Domains (2) summary

sd00039
Location:98 → 135

7WD40; WD40 repeat [structural motif]

cl29593
Location:94 → 364

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896312.1 → XP_031752172.1 proteasomal ATPase-associated factor 1 isoform X6

UniProtKB/TrEMBL

A0A6I8Q876, A0A803K6A6, A0A8J1J586

Conserved Domains (2) summary

sd00039
Location:87 → 124

7WD40; WD40 repeat [structural motif]

cl29593
Location:83 → 377

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896311.1 → XP_031752171.1 proteasomal ATPase-associated factor 1 isoform X6

UniProtKB/TrEMBL

A0A6I8Q876, A0A803K6A6, A0A8J1J586

Conserved Domains (2) summary

sd00039
Location:87 → 124

7WD40; WD40 repeat [structural motif]

cl29593
Location:83 → 377

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896305.1 → XP_031752165.1 proteasomal ATPase-associated factor 1 isoform X2

UniProtKB/TrEMBL

A0A6I8Q876, A0A803K6A6, A0A8J1J581

Conserved Domains (2) summary

sd00039
Location:89 → 126

7WD40; WD40 repeat [structural motif]

cl29593
Location:85 → 379

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896309.1 → XP_031752169.1 proteasomal ATPase-associated factor 1 isoform X6

UniProtKB/TrEMBL

A0A6I8Q876, A0A803K6A6, A0A8J1J586

Conserved Domains (2) summary

sd00039
Location:87 → 124

7WD40; WD40 repeat [structural motif]

cl29593
Location:83 → 377

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896310.1 → XP_031752170.1 proteasomal ATPase-associated factor 1 isoform X6

UniProtKB/TrEMBL

A0A6I8Q876, A0A803K6A6, A0A8J1J586

Related

ENSXETP00000006578.5, ENSXETT00000006578.5

Conserved Domains (2) summary

sd00039
Location:87 → 124

7WD40; WD40 repeat [structural motif]

cl29593
Location:83 → 377

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896307.1 → XP_031752167.1 proteasomal ATPase-associated factor 1 isoform X4

UniProtKB/TrEMBL

A0A6I8Q876, A0A803K6A6, A0A8J1J2U5

Conserved Domains (2) summary

sd00039
Location:88 → 125

7WD40; WD40 repeat [structural motif]

cl29593
Location:84 → 378

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896308.1 → XP_031752168.1 proteasomal ATPase-associated factor 1 isoform X5

UniProtKB/TrEMBL

A0A1B8Y3M4, A0A8J1J2T9

Conserved Domains (2) summary

sd00039
Location:131 → 167

7WD40; WD40 repeat [structural motif]

cl29593
Location:94 → 378

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896314.1 → XP_031752174.1 proteasomal ATPase-associated factor 1 isoform X8

UniProtKB/TrEMBL

A0A1B8Y3M4, A0A8J1J2T5

Conserved Domains (2) summary

sd00039
Location:68 → 105

7WD40; WD40 repeat [structural motif]

cl29593
Location:67 → 358

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031896304.1 → XP_031752164.1 proteasomal ATPase-associated factor 1 isoform X1

UniProtKB/TrEMBL

A0A1B8Y3M4, A0A8J1J2T8

Conserved Domains (2) summary

sd00039
Location:98 → 135

7WD40; WD40 repeat [structural motif]

cl29593
Location:94 → 388

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...