LOC101735265 gastrula zinc finger protein XlCGF26.1-like [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: LOC101735265provided by Xenbase
Official Full Name: gastrula zinc finger protein XlCGF26.1-likeprovided by Xenbase
Primary source: Xenbase:XB-GENE-29088423
Gene type: protein coding
RefSeq status: MODEL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	6	NC_030682.2 (4588768..4595772)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	Unplaced Scaffold	NW_016683516.1 (186412..193100, complement)

Chromosome 6 - NC_030682.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

Orthologs from OrthoDB

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: gastrula zinc finger protein XlCGF26.1-like; oocyte zinc finger protein XlCOF6-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

4588768..4595772

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012954170.3 → XP_012809624.1 gastrula zinc finger protein XlCGF26.1-like isoform X3

See identical proteins and their annotated locations for XP_012809624.1

UniProtKB/TrEMBL

A0A8J0SAH3

Conserved Domains (3) summary

COG5048
Location:68 → 452

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:407 → 427

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:588 → 612

zf-H2C2_2; Zinc-finger double domain
XM_031904227.1 → XP_031760087.1 oocyte zinc finger protein XlCOF6-like isoform X2

UniProtKB/TrEMBL

A0A8J1JQD4

Conserved Domains (4) summary

COG5048
Location:78 → 462

COG5048; FOG: Zn-finger [General function prediction only]

COG5189
Location:495 → 578

SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

sd00017
Location:417 → 437

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:598 → 622

zf-H2C2_2; Zinc-finger double domain
XM_031904226.1 → XP_031760086.1 oocyte zinc finger protein XlCOF6-like isoform X1

UniProtKB/TrEMBL

A0A8J1JU24

Conserved Domains (4) summary

COG5048
Location:82 → 466

COG5048; FOG: Zn-finger [General function prediction only]

COG5189
Location:499 → 582

SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

sd00017
Location:421 → 441

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam13465
Location:602 → 626

zf-H2C2_2; Zinc-finger double domain