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LRP2BP LRP2 binding protein [ Sus scrofa (pig) ]

Gene ID: 100155710, updated on 17-Aug-2024

Summary

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Official Symbol
LRP2BPprovided by VGNC
Official Full Name
LRP2 binding proteinprovided by VGNC
Primary source
VGNC:VGNC:96080
See related
Ensembl:ENSSSCG00000015792
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 1.7), lung (RPKM 1.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See LRP2BP in Genome Data Viewer
Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (46383433..46445688, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (53184181..53222244, complement)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 4 Neighboring gene cilia and flagella associated protein 97 Neighboring gene sorting nexin 25 Neighboring gene ankyrin repeat domain 37 Neighboring gene UFM1 specific peptidase 2 Neighboring gene cilia and flagella associated protein 96 Neighboring gene coiled-coil domain containing 110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LRP2-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243566.2 → NP_001230495.2  LRP2-binding protein

    Status: VALIDATED

    Source sequence(s)
    AK234106
    UniProtKB/TrEMBL
    A0A4X1VX80, A0A5G2QGK7
    Related
    ENSSSCP00000062943.2, ENSSSCT00000070542.2
    Conserved Domains (3) summary
    smart00671
    Location:227 → 261
    SEL1; Sel1-like repeats
    COG0790
    Location:80 → 273
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:128 → 164
    SLR; SLR repeat [structural motif]

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    46383433..46445688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021074539.1 → XP_020930198.1  LRP2-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A4X1VWH5, A0A8D1X8Y5, A0A8D1XDI5, F1RZQ4
    Conserved Domains (3) summary
    smart00671
    Location:298 → 332
    SEL1; Sel1-like repeats
    COG0790
    Location:62 → 255
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:110 → 146
    SLR; SLR repeat [structural motif]

  2. XM_021074536.1 → XP_020930195.1  LRP2-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A4X1VWH5, A0A8D1X8Y5, A0A8D1XDI5, F1RZQ4
    Related
    ENSSSCP00000016734.2, ENSSSCT00000017195.5
    Conserved Domains (3) summary
    smart00671
    Location:298 → 332
    SEL1; Sel1-like repeats
    COG0790
    Location:62 → 255
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:110 → 146
    SLR; SLR repeat [structural motif]

  3. XM_021074535.1 → XP_020930194.1  LRP2-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A4X1VWH5, A0A8D1X8Y5, A0A8D1XDI5, F1RZQ4
    Conserved Domains (3) summary
    smart00671
    Location:298 → 332
    SEL1; Sel1-like repeats
    COG0790
    Location:62 → 255
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:110 → 146
    SLR; SLR repeat [structural motif]

  4. XM_021074538.1 → XP_020930197.1  LRP2-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A4X1VWH5, A0A8D1X8Y5, A0A8D1XDI5, F1RZQ4
    Conserved Domains (3) summary
    smart00671
    Location:298 → 332
    SEL1; Sel1-like repeats
    COG0790
    Location:62 → 255
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:110 → 146
    SLR; SLR repeat [structural motif]

  5. XM_021074537.1 → XP_020930196.1  LRP2-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A4X1VWH5, A0A8D1X8Y5, A0A8D1XDI5, F1RZQ4
    Conserved Domains (3) summary
    smart00671
    Location:298 → 332
    SEL1; Sel1-like repeats
    COG0790
    Location:62 → 255
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:110 → 146
    SLR; SLR repeat [structural motif]

  6. XM_021074534.1 → XP_020930193.1  LRP2-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8D1XDI5
    Conserved Domains (3) summary
    smart00671
    Location:304 → 338
    SEL1; Sel1-like repeats
    COG0790
    Location:70 → 261
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:121 → 152
    SLR; SLR repeat [structural motif]

  7. XM_021074540.1 → XP_020930199.1  LRP2-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A4X1VWH5, A0A8D1X8Y5, A0A8D1XDI5, F1RZQ4
    Conserved Domains (3) summary
    smart00671
    Location:298 → 332
    SEL1; Sel1-like repeats
    COG0790
    Location:62 → 255
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:110 → 146
    SLR; SLR repeat [structural motif]

  8. XM_021074532.1 → XP_020930191.1  LRP2-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A5G2QGK7
    Conserved Domains (3) summary
    smart00671
    Location:306 → 340
    SEL1; Sel1-like repeats
    COG0790
    Location:70 → 263
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:118 → 154
    SLR; SLR repeat [structural motif]

  9. XM_021074533.1 → XP_020930192.1  LRP2-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A5G2QGK7
    Conserved Domains (3) summary
    smart00671
    Location:306 → 340
    SEL1; Sel1-like repeats
    COG0790
    Location:70 → 263
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:118 → 154
    SLR; SLR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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