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Conserved domains on  [gi|527498250|ref|NP_001230495|]
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LRP2-binding protein [Sus scrofa]

Protein Classification

SEL1-like repeat protein( domain architecture ID 11434924)

SEL1-like repeat family protein may function as an adaptor protein for the assembly of macromolecular complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  16870393
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
59-274 5.85e-35

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 128.51  E-value: 5.85e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  59 ANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKK 138
Cdd:COG0790   13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 139 IVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYW 216
Cdd:COG0790   93 AAEQGDAEA-------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 527498250 217 HSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYK 274
Cdd:COG0790  162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 316-350 1.63e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.61  E-value: 1.63e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 527498250   316 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 350
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
59-274 5.85e-35

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 128.51  E-value: 5.85e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  59 ANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKK 138
Cdd:COG0790   13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 139 IVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYW 216
Cdd:COG0790   93 AAEQGDAEA-------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 527498250 217 HSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYK 274
Cdd:COG0790  162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 227-261 1.13e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.78  E-value: 1.13e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 527498250   227 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERGN 261
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 227-260 3.95e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 40.20  E-value: 3.95e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 527498250  227 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERG 260
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 316-350 1.63e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.61  E-value: 1.63e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 527498250   316 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 350
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 316-350 8.40e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 33.65  E-value: 8.40e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 527498250  316 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 350
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
59-274 5.85e-35

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 128.51  E-value: 5.85e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  59 ANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKK 138
Cdd:COG0790   13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 139 IVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYW 216
Cdd:COG0790   93 AAEQGDAEA-------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 527498250 217 HSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYK 274
Cdd:COG0790  162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
TPR COG0790
TPR repeat [General function prediction only];
32-259 3.32e-30

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 115.80  E-value: 3.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  32 YLSLSPYAAKNPKLFQWRKEKTDHYNHANLVDKALQLLKERIRRGDTLAYFLRGQLYfEEGW-----YEEALEQFEEIKE 106
Cdd:COG0790   17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMY-AEGRgvpkdYEKALEWFEKAAE 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 107 KDH-QATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADN 185
Cdd:COG0790   96 QGDaEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA-------QYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQ 168

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 527498250 186 GNPKAsvkaQSILGLYYSTKE--PKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAER 259
Cdd:COG0790  169 GDADA----QYNLGVLYENGRgvPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
90-349 7.75e-29

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 111.94  E-value: 7.75e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  90 EEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVK 169
Cdd:COG0790    1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 170 RSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTE 247
Cdd:COG0790   81 KDYEKALEWFEKAAEQGDAEA----QYNLGLMYEEGLgvPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 248 AALHCLREAAERGNVYAQGNLVEYYYKMKF----FTKCVAFSKRIADydevhdipmiaqltdclpefisKGMAMASFYHA 323
Cdd:COG0790  157 KAAEWYRKAAEQGDADAQYNLGVLYENGRGvpkdPAKALEWYRKAAE----------------------QGDADAQYNLG 214

                        250       260
                 ....*....|....*....|....*.
gi 527498250 324 RCLQLGLGITKDEATAKHYYSKACRL 349
Cdd:COG0790  215 RLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
146-354 3.07e-18

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 83.05  E-value: 3.07e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 146 KARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKASVKAQSILGLYYSTKE--PKELEKAFYWHSEACGN 223
Cdd:COG0790   17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRgvPKDYEKALEWFEKAAEQ 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 224 GNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYKMKF----FTKCVAFSKRIADydevhdipm 299
Cdd:COG0790   97 GDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGvpkdPAKAAEWYRKAAE--------- 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 527498250 300 iaqltdclpefisKGMAMASFYHARCLQLGLGITKDEATAKHYYSKACRLNPALA 354
Cdd:COG0790  168 -------------QGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADA 209
TPR COG0790
TPR repeat [General function prediction only];
175-354 4.16e-08

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 53.39  E-value: 4.16e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 175 AERLWLFAADNGNPKASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLR 254
Cdd:COG0790   12 AAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFE 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 255 EAAERGNVYAQGNLveyyykmkfftkcvafskriadydevhdipmiaqltdclpefiskgmamasfyhARCLQLGLGITK 334
Cdd:COG0790   92 KAAEQGDAEAQYNL------------------------------------------------------GLMYEEGLGVPQ 117

                        170       180
                 ....*....|....*....|
gi 527498250 335 DEATAKHYYSKACRLNPALA 354
Cdd:COG0790  118 DYAKALEWYEKAAEQGDADA 137
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 227-261 1.13e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.78  E-value: 1.13e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 527498250   227 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERGN 261
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 63-275 1.42e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 1.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  63 DKALQLLKE--RIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQ---ATYQLGVMYYDGLgtttDAEKGVEYMK 137
Cdd:COG2956   25 DKAIDLLEEalELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDraeALLELAQDYLKAG----LLDRAEELLE 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 138 KIVDSPcPKARhlqfAAAYNLGRAYYEGKGVKRSDEEAERLwlfAADNGNpkaSVKAQSILG-LYYSTKEPKE----LEK 212
Cdd:COG2956  101 KLLELD-PDDA----EALRLLAEIYEQEGDWEKAIEVLERL---LKLGPE---NAHAYCELAeLYLEQGDYDEaieaLEK 169

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 527498250 213 AFYWHSEacgngNLESQGALGLMYFygqgIRQDTEAALHCLREAAER--GNVYAQGNLVEYYYKM 275
Cdd:COG2956  170 ALKLDPD-----CARALLLLAELYL----EQGDYEEAIAALERALEQdpDYLPALPRLAELYEKL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 38-180 1.55e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 1.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  38 YAAKNPKLFQWRKEKTDHYNHANLVDKALQLLKE--RIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKD--HQATY 113
Cdd:COG2956  136 LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKalKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpdYLPAL 215

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 527498250 114 QLGVMYYDGLGtttDAEKGVEYMKKIVdspcpkARHLQFAAAYNLGRAYYEGKGvkrsDEEAERLWL 180
Cdd:COG2956  216 PRLAELYEKLG---DPEEALELLRKAL------ELDPSDDLLLALADLLERKEG----LEAALALLE 269
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 154-187 2.89e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 40.62  E-value: 2.89e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 527498250   154 AAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGN 187
Cdd:smart00671   3 AQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 227-260 3.95e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 40.20  E-value: 3.95e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 527498250  227 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERG 260
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 78-357 7.84e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 7.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  78 TLAYFLRGQLYFEEGWYEEALEQFEEIKEKDH---QATYQLGVMYYDgLGtttDAEKGVEYMKKIVdspcpKARHLQFAA 154
Cdd:COG2956    8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPetvEAHLALGNLYRR-RG---EYDRAIRIHQKLL-----ERDPDRAEA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 155 AYNLGRAYYEGKgvkrSDEEAERLWLFAADNgNPKASVKAQSILGLYYSTKEPKE----LEKAfywhsEACGNGNLESQG 230
Cdd:COG2956   79 LLELAQDYLKAG----LLDRAEELLEKLLEL-DPDDAEALRLLAEIYEQEGDWEKaievLERL-----LKLGPENAHAYC 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250 231 ALGLMYFYgqgiRQDTEAALHCLREA--AERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDevhdipmiaqltdclP 308
Cdd:COG2956  149 ELAELYLE----QGDYDEAIEALEKAlkLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD---------------P 209

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 527498250 309 EFISKGMAMASFYHARclqlglgitKDEATAKHYYSKACRLNPALADEL 357
Cdd:COG2956  210 DYLPALPRLAELYEKL---------GDPEEALELLRKALELDPSDDLLL 249
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 153-186 3.71e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 37.50  E-value: 3.71e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 527498250  153 AAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNG 186
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
63-164 9.87e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.38  E-value: 9.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  63 DKALQLLKE--RIRRGDTLAYFLRGQLYFEEGWYEEALEQFE---EIKEKDHQATYQLGVMYYDgLGtttDAEKGVEYMK 137
Cdd:COG0457   25 EEAIEDYEKalELDPDDAEALYNLGLAYLRLGRYEEALADYEqalELDPDDAEALNNLGLALQA-LG---RYEEALEDYD 100

                         90       100
                 ....*....|....*....|....*..
gi 527498250 138 KIVdspcpKARHLQFAAAYNLGRAYYE 164
Cdd:COG0457  101 KAL-----ELDPDDAEALYNLGLALLE 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 63-185 1.15e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.63  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  63 DKALQLLKERIRR--GDTLAYFLRGQLYFEEGWYEEALEQFEEIKE---KDHQATYQLGVMYYDgLGtttDAEKGVEYMK 137
Cdd:COG4783   21 DEAEALLEKALELdpDNPEAFALLGEILLQLGDLDEAIVLLHEALEldpDEPEARLNLGLALLK-AG---DYDEALALLE 96

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 527498250 138 KIVdspcpKARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADN 185
Cdd:COG4783   97 KAL-----KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 55-159 1.48e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.36  E-value: 1.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  55 HYNHANL------VDKALQLLKERIRR--GDTLAYFLRGQLYFEEGWYEEALEQFE---EIKEKDHQATYQLGVMYYDgl 123
Cdd:COG3914  115 LFNLGNLllalgrLEEALAALRRALALnpDFAEAYLNLGEALRRLGRLEEAIAALRralELDPDNAEALNNLGNALQD-- 192

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 527498250 124 gtTTDAEKGVEYMKKIV--DSPCPKARHLQFAAAYNLG 159
Cdd:COG3914  193 --LGRLEEAIAAYRRALelDPDNADAHSNLLFALRQAC 228
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 316-350 1.63e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.61  E-value: 1.63e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 527498250   316 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 350
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 109-138 3.15e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 34.84  E-value: 3.15e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 527498250   109 HQATYQLGVMYYDGLGTTTDAEKGVEYMKK 138
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKK 30
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 63-141 5.57e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.12  E-value: 5.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  63 DKALQLLKERIRR--GDTL---AYFLRGQLYFEEGWYEEALEQFEEI------KEKDHQATYQLGVMYYDgLGtttDAEK 131
Cdd:COG1729   10 DEAIAAFKAFLKRypNSPLapdALYWLGEAYYALGDYDEAAEAFEKLlkrypdSPKAPDALLKLGLSYLE-LG---DYDK 85

                         90
                 ....*....|
gi 527498250 132 GVEYMKKIVD 141
Cdd:COG1729   86 ARATLEELIK 95
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
80-164 8.11e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 37.68  E-value: 8.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527498250  80 AYFLRGQLYFEEGWYEEALEQFE---EIKEKDHQATYQLGVMYYDgLGtttDAEKGVEYMKKIVdspcpkARHLQFAAAY 156
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEkalELDPDDAEALYNLGLAYLR-LG---RYEEALADYEQAL------ELDPDDAEAL 79


                 ....*....
gi 527498250 157 -NLGRAYYE 164
Cdd:COG0457   80 nNLGLALQA 88
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 316-350 8.40e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 33.65  E-value: 8.40e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 527498250  316 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 350
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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