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Conserved domains on  [gi|1191840384|ref|XP_020930191|]
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LRP2-binding protein isoform X1 [Sus scrofa]

Protein Classification

SEL1-like repeat protein( domain architecture ID 11434924)

SEL1-like repeat family protein may function as an adaptor protein for the assembly of macromolecular complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  16870393
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
49-264 5.26e-35

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 128.12  E-value: 5.26e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  49 ANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKK 128
Cdd:COG0790    13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 129 IVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYW 206
Cdd:COG0790    93 AAEQGDAEA-------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191840384 207 HSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYK 264
Cdd:COG0790   162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 306-340 1.89e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.61  E-value: 1.89e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840384  306 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 340
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
49-264 5.26e-35

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 128.12  E-value: 5.26e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  49 ANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKK 128
Cdd:COG0790    13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 129 IVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYW 206
Cdd:COG0790    93 AAEQGDAEA-------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191840384 207 HSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYK 264
Cdd:COG0790   162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 217-251 1.38e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.39  E-value: 1.38e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840384  217 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERGN 251
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 217-250 4.37e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 40.20  E-value: 4.37e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1191840384 217 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERG 250
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 306-340 1.89e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.61  E-value: 1.89e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840384  306 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 340
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 306-340 9.11e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 33.65  E-value: 9.11e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1191840384 306 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 340
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
49-264 5.26e-35

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 128.12  E-value: 5.26e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  49 ANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKK 128
Cdd:COG0790    13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 129 IVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYW 206
Cdd:COG0790    93 AAEQGDAEA-------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191840384 207 HSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYK 264
Cdd:COG0790   162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
TPR COG0790
TPR repeat [General function prediction only];
22-249 3.03e-30

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 115.41  E-value: 3.03e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  22 YLSLSPYAAKNPKLFQWRKEKTDHYNHANLVDKALQLLKERIRRGDTLAYFLRGQLYfEEGW-----YEEALEQFEEIKE 96
Cdd:COG0790    17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMY-AEGRgvpkdYEKALEWFEKAAE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  97 KDH-QATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADN 175
Cdd:COG0790    96 QGDaEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA-------QYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQ 168

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1191840384 176 GNPKAsvkaQSILGLYYSTKE--PKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAER 249
Cdd:COG0790   169 GDADA----QYNLGVLYENGRgvPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
80-339 6.82e-29

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 111.94  E-value: 6.82e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  80 EEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVK 159
Cdd:COG0790     1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 160 RSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTE 237
Cdd:COG0790    81 KDYEKALEWFEKAAEQGDAEA----QYNLGLMYEEGLgvPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 238 AALHCLREAAERGNVYAQGNLVEYYYKMKF----FTKCVAFSKRIADydevhdipmiaqltdclpefisKGMAMASFYHA 313
Cdd:COG0790   157 KAAEWYRKAAEQGDADAQYNLGVLYENGRGvpkdPAKALEWYRKAAE----------------------QGDADAQYNLG 214

                         250       260
                  ....*....|....*....|....*.
gi 1191840384 314 RCLQLGLGITKDEATAKHYYSKACRL 339
Cdd:COG0790   215 RLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
136-344 2.88e-18

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 83.05  E-value: 2.88e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 136 KARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKASVKAQSILGLYYSTKE--PKELEKAFYWHSEACGN 213
Cdd:COG0790    17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRgvPKDYEKALEWFEKAAEQ 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 214 GNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYKMKF----FTKCVAFSKRIADydevhdipm 289
Cdd:COG0790    97 GDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGvpkdPAKAAEWYRKAAE--------- 167

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1191840384 290 iaqltdclpefisKGMAMASFYHARCLQLGLGITKDEATAKHYYSKACRLNPALA 344
Cdd:COG0790   168 -------------QGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADA 209
TPR COG0790
TPR repeat [General function prediction only];
165-344 4.16e-08

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 53.39  E-value: 4.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 165 AERLWLFAADNGNPKASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLR 244
Cdd:COG0790    12 AAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFE 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 245 EAAERGNVYAQGNLveyyykmkfftkcvafskriadydevhdipmiaqltdclpefiskgmamasfyhARCLQLGLGITK 324
Cdd:COG0790    92 KAAEQGDAEAQYNL------------------------------------------------------GLMYEEGLGVPQ 117

                         170       180
                  ....*....|....*....|
gi 1191840384 325 DEATAKHYYSKACRLNPALA 344
Cdd:COG0790   118 DYAKALEWYEKAAEQGDADA 137
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 217-251 1.38e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.39  E-value: 1.38e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840384  217 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERGN 251
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 53-265 1.44e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 1.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  53 DKALQLLKE--RIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQ---ATYQLGVMYYDGLgtttDAEKGVEYMK 127
Cdd:COG2956    25 DKAIDLLEEalELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDraeALLELAQDYLKAG----LLDRAEELLE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 128 KIVDSPcPKARhlqfAAAYNLGRAYYEGKGVKRSDEEAERLwlfAADNGNpkaSVKAQSILG-LYYSTKEPKE----LEK 202
Cdd:COG2956   101 KLLELD-PDDA----EALRLLAEIYEQEGDWEKAIEVLERL---LKLGPE---NAHAYCELAeLYLEQGDYDEaieaLEK 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1191840384 203 AFYWHSEacgngNLESQGALGLMYFygqgIRQDTEAALHCLREAAER--GNVYAQGNLVEYYYKM 265
Cdd:COG2956   170 ALKLDPD-----CARALLLLAELYL----EQGDYEEAIAALERALEQdpDYLPALPRLAELYEKL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 28-170 1.53e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 1.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  28 YAAKNPKLFQWRKEKTDHYNHANLVDKALQLLKE--RIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKD--HQATY 103
Cdd:COG2956   136 LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKalKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpdYLPAL 215

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1191840384 104 QLGVMYYDGLGtttDAEKGVEYMKKIVdspcpkARHLQFAAAYNLGRAYYEGKGvkrsDEEAERLWL 170
Cdd:COG2956   216 PRLAELYEKLG---DPEEALELLRKAL------ELDPSDDLLLALADLLERKEG----LEAALALLE 269
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 144-177 3.60e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 40.23  E-value: 3.60e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1191840384  144 AAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGN 177
Cdd:smart00671   3 AQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 217-250 4.37e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 40.20  E-value: 4.37e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1191840384 217 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERG 250
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 68-347 7.63e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 7.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  68 TLAYFLRGQLYFEEGWYEEALEQFEEIKEKDH---QATYQLGVMYYDgLGtttDAEKGVEYMKKIVdspcpKARHLQFAA 144
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPetvEAHLALGNLYRR-RG---EYDRAIRIHQKLL-----ERDPDRAEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 145 AYNLGRAYYEGKgvkrSDEEAERLWLFAADNgNPKASVKAQSILGLYYSTKEPKE----LEKAfywhsEACGNGNLESQG 220
Cdd:COG2956    79 LLELAQDYLKAG----LLDRAEELLEKLLEL-DPDDAEALRLLAEIYEQEGDWEKaievLERL-----LKLGPENAHAYC 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384 221 ALGLMYFYgqgiRQDTEAALHCLREA--AERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDevhdipmiaqltdclP 298
Cdd:COG2956   149 ELAELYLE----QGDYDEAIEALEKAlkLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD---------------P 209

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1191840384 299 EFISKGMAMASFYHARclqlglgitKDEATAKHYYSKACRLNPALADEL 347
Cdd:COG2956   210 DYLPALPRLAELYEKL---------GDPEEALELLRKALELDPSDDLLL 249
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 143-176 3.98e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 37.50  E-value: 3.98e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1191840384 143 AAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNG 176
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
53-154 9.91e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.38  E-value: 9.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  53 DKALQLLKE--RIRRGDTLAYFLRGQLYFEEGWYEEALEQFE---EIKEKDHQATYQLGVMYYDgLGtttDAEKGVEYMK 127
Cdd:COG0457    25 EEAIEDYEKalELDPDDAEALYNLGLAYLRLGRYEEALADYEqalELDPDDAEALNNLGLALQA-LG---RYEEALEDYD 100

                          90       100
                  ....*....|....*....|....*..
gi 1191840384 128 KIVdspcpKARHLQFAAAYNLGRAYYE 154
Cdd:COG0457   101 KAL-----ELDPDDAEALYNLGLALLE 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 53-175 1.01e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  53 DKALQLLKERIRR--GDTLAYFLRGQLYFEEGWYEEALEQFEEIKE---KDHQATYQLGVMYYDgLGtttDAEKGVEYMK 127
Cdd:COG4783    21 DEAEALLEKALELdpDNPEAFALLGEILLQLGDLDEAIVLLHEALEldpDEPEARLNLGLALLK-AG---DYDEALALLE 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1191840384 128 KIVdspcpKARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADN 175
Cdd:COG4783    97 KAL-----KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 45-149 1.27e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.75  E-value: 1.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  45 HYNHANL------VDKALQLLKERIRR--GDTLAYFLRGQLYFEEGWYEEALEQFE---EIKEKDHQATYQLGVMYYDgl 113
Cdd:COG3914   115 LFNLGNLllalgrLEEALAALRRALALnpDFAEAYLNLGEALRRLGRLEEAIAALRralELDPDNAEALNNLGNALQD-- 192

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1191840384 114 gtTTDAEKGVEYMKKIV--DSPCPKARHLQFAAAYNLG 149
Cdd:COG3914   193 --LGRLEEAIAAYRRALelDPDNADAHSNLLFALRQAC 228
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 306-340 1.89e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.61  E-value: 1.89e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840384  306 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 340
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 99-128 3.62e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 34.84  E-value: 3.62e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1191840384   99 HQATYQLGVMYYDGLGTTTDAEKGVEYMKK 128
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKK 30
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 53-131 5.09e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.51  E-value: 5.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  53 DKALQLLKERIRR--GDTL---AYFLRGQLYFEEGWYEEALEQFEEI------KEKDHQATYQLGVMYYDgLGtttDAEK 121
Cdd:COG1729    10 DEAIAAFKAFLKRypNSPLapdALYWLGEAYYALGDYDEAAEAFEKLlkrypdSPKAPDALLKLGLSYLE-LG---DYDK 85

                          90
                  ....*....|
gi 1191840384 122 GVEYMKKIVD 131
Cdd:COG1729    86 ARATLEELIK 95
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
70-154 8.00e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 37.29  E-value: 8.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840384  70 AYFLRGQLYFEEGWYEEALEQFE---EIKEKDHQATYQLGVMYYDgLGtttDAEKGVEYMKKIVdspcpkARHLQFAAAY 146
Cdd:COG0457    10 AYNNLGLAYRRLGRYEEAIEDYEkalELDPDDAEALYNLGLAYLR-LG---RYEEALADYEQAL------ELDPDDAEAL 79


                  ....*....
gi 1191840384 147 -NLGRAYYE 154
Cdd:COG0457    80 nNLGLALQA 88
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 306-340 9.11e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 33.65  E-value: 9.11e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1191840384 306 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 340
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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