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Conserved domains on  [gi|1191840398|ref|XP_020930198|]
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LRP2-binding protein isoform X3 [Sus scrofa]

Protein Classification

SEL1-like repeat protein( domain architecture ID 11434924)

SEL1-like repeat family protein may function as an adaptor protein for the assembly of macromolecular complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  16870393
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
41-256 1.48e-34

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 126.97  E-value: 1.48e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  41 ANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKK 120
Cdd:COG0790    13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 121 IVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYW 198
Cdd:COG0790    93 AAEQGDAEA-------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191840398 199 HSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYK 256
Cdd:COG0790   162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 298-332 2.10e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.23  E-value: 2.10e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840398  298 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 332
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
41-256 1.48e-34

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 126.97  E-value: 1.48e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  41 ANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKK 120
Cdd:COG0790    13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 121 IVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYW 198
Cdd:COG0790    93 AAEQGDAEA-------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191840398 199 HSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYK 256
Cdd:COG0790   162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 209-243 1.59e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.39  E-value: 1.59e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840398  209 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERGN 243
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 209-242 5.20e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.81  E-value: 5.20e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1191840398 209 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERG 242
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 298-332 2.10e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.23  E-value: 2.10e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840398  298 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 332
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
41-256 1.48e-34

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 126.97  E-value: 1.48e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  41 ANLVDKALQLLKERIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKK 120
Cdd:COG0790    13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 121 IVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYW 198
Cdd:COG0790    93 AAEQGDAEA-------QYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1191840398 199 HSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYK 256
Cdd:COG0790   162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
TPR COG0790
TPR repeat [General function prediction only];
14-241 8.13e-30

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 114.26  E-value: 8.13e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  14 YLSLSPYAAKNPKLFQWRKEKTDHYNHANLVDKALQLLKERIRRGDTLAYFLRGQLYfEEGW-----YEEALEQFEEIKE 88
Cdd:COG0790    17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMY-AEGRgvpkdYEKALEWFEKAAE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  89 KDH-QATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKArhlqfaaAYNLGRAYYEGKGVKRSDEEAERLWLFAADN 167
Cdd:COG0790    96 QGDaEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA-------QYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQ 168

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1191840398 168 GNPKAsvkaQSILGLYYSTKE--PKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLREAAER 241
Cdd:COG0790   169 GDADA----QYNLGVLYENGRgvPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
72-331 2.10e-28

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 110.40  E-value: 2.10e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  72 EEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTTDAEKGVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVK 151
Cdd:COG0790     1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 152 RSDEEAERLWLFAADNGNPKAsvkaQSILGLYYSTKE--PKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTE 229
Cdd:COG0790    81 KDYEKALEWFEKAAEQGDAEA----QYNLGLMYEEGLgvPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 230 AALHCLREAAERGNVYAQGNLVEYYYKMKF----FTKCVAFSKRIADydevhdipmiaqltdclpefisKGMAMASFYHA 305
Cdd:COG0790   157 KAAEWYRKAAEQGDADAQYNLGVLYENGRGvpkdPAKALEWYRKAAE----------------------QGDADAQYNLG 214

                         250       260
                  ....*....|....*....|....*.
gi 1191840398 306 RCLQLGLGITKDEATAKHYYSKACRL 331
Cdd:COG0790   215 RLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
128-336 6.60e-18

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 81.90  E-value: 6.60e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 128 KARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGNPKASVKAQSILGLYYSTKE--PKELEKAFYWHSEACGN 205
Cdd:COG0790    17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRgvPKDYEKALEWFEKAAEQ 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 206 GNLESQGALGLMYFYGQGIRQDTEAALHCLREAAERGNVYAQGNLVEYYYKMKFFTKcvafskriaDYDEVHDIPMIAql 285
Cdd:COG0790    97 GDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPK---------DPAKAAEWYRKA-- 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1191840398 286 tdclpefISKGMAMASFYHARCLQLGLGITKDEATAKHYYSKACRLNPALA 336
Cdd:COG0790   166 -------AEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADA 209
TPR COG0790
TPR repeat [General function prediction only];
157-336 7.37e-08

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 52.62  E-value: 7.37e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 157 AERLWLFAADNGNPKASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEAALHCLR 236
Cdd:COG0790    12 AAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFE 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 237 EAAERGNVYAQGNLveyyykmkfftkcvafskriadydevhdipmiaqltdclpefiskgmamasfyhARCLQLGLGITK 316
Cdd:COG0790    92 KAAEQGDAEAQYNL------------------------------------------------------GLMYEEGLGVPQ 117

                         170       180
                  ....*....|....*....|
gi 1191840398 317 DEATAKHYYSKACRLNPALA 336
Cdd:COG0790   118 DYAKALEWYEKAAEQGDADA 137
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 209-243 1.59e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.39  E-value: 1.59e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840398  209 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERGN 243
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 20-162 3.11e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 3.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  20 YAAKNPKLFQWRKEKTDHYNHANLVDKALQLLKE--RIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKD--HQATY 95
Cdd:COG2956   136 LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKalKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDpdYLPAL 215

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1191840398  96 QLGVMYYDGLGtttDAEKGVEYMKKIVdspcpkARHLQFAAAYNLGRAYYEGKGvkrsDEEAERLWL 162
Cdd:COG2956   216 PRLAELYEKLG---DPEEALELLRKAL------ELDPSDDLLLALADLLERKEG----LEAALALLE 269
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 136-169 4.08e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 40.23  E-value: 4.08e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1191840398  136 AAYNLGRAYYEGKGVKRSDEEAERLWLFAADNGN 169
Cdd:smart00671   3 AQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 45-257 4.51e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 4.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  45 DKALQLLKE--RIRRGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQ---ATYQLGVMYYDGLgtttDAEKGVEYMK 119
Cdd:COG2956    25 DKAIDLLEEalELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDraeALLELAQDYLKAG----LLDRAEELLE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 120 KIVDSPcPKARhlqfAAAYNLGRAYYEGKGVKRSDEEAERLwlfAADNGNpkaSVKAQSILG-LYYSTKEPKE----LEK 194
Cdd:COG2956   101 KLLELD-PDDA----EALRLLAEIYEQEGDWEKAIEVLERL---LKLGPE---NAHAYCELAeLYLEQGDYDEaieaLEK 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1191840398 195 AFYWHSEacgngNLESQGALGLMYFygqgIRQDTEAALHCLREAAER--GNVYAQGNLVEYYYKM 257
Cdd:COG2956   170 ALKLDPD-----CARALLLLAELYL----EQGDYEEAIAALERALEQdpDYLPALPRLAELYEKL 225
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 209-242 5.20e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.81  E-value: 5.20e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1191840398 209 ESQGALGLMYFYGQGIRQDTEAALHCLREAAERG 242
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 60-339 2.72e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.02  E-value: 2.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  60 TLAYFLRGQLYFEEGWYEEALEQFEEIKEKDH---QATYQLGVMYYDgLGtttDAEKGVEYMKKIVdspcpKARHLQFAA 136
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPetvEAHLALGNLYRR-RG---EYDRAIRIHQKLL-----ERDPDRAEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 137 AYNLGRAYYEGKgvkrSDEEAERLWLFAADNgNPKASVKAQSILGLYYSTKEPKE----LEKAfywhsEACGNGNLESQG 212
Cdd:COG2956    79 LLELAQDYLKAG----LLDRAEELLEKLLEL-DPDDAEALRLLAEIYEQEGDWEKaievLERL-----LKLGPENAHAYC 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398 213 ALGLMYFYgqgiRQDTEAALHCLREA--AERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDevhdipmiaqltdclP 290
Cdd:COG2956   149 ELAELYLE----QGDYDEAIEALEKAlkLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD---------------P 209

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1191840398 291 EFISKGMAMASFYHARclqlglgitKDEATAKHYYSKACRLNPALADEL 339
Cdd:COG2956   210 DYLPALPRLAELYEKL---------GDPEEALELLRKALELDPSDDLLL 249
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 135-168 4.74e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 37.12  E-value: 4.74e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1191840398 135 AAAYNLGRAYYEGKGVKRSDEEAERLWLFAADNG 168
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 37-141 1.43e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.36  E-value: 1.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  37 HYNHANL------VDKALQLLKERIRR--GDTLAYFLRGQLYFEEGWYEEALEQFE---EIKEKDHQATYQLGVMYYDgl 105
Cdd:COG3914   115 LFNLGNLllalgrLEEALAALRRALALnpDFAEAYLNLGEALRRLGRLEEAIAALRralELDPDNAEALNNLGNALQD-- 192

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1191840398 106 gtTTDAEKGVEYMKKIV--DSPCPKARHLQFAAAYNLG 141
Cdd:COG3914   193 --LGRLEEAIAAYRRALelDPDNADAHSNLLFALRQAC 228
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 45-167 1.92e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  45 DKALQLLKERIRR--GDTLAYFLRGQLYFEEGWYEEALEQFEEIKE---KDHQATYQLGVMYYDgLGtttDAEKGVEYMK 119
Cdd:COG4783    21 DEAEALLEKALELdpDNPEAFALLGEILLQLGDLDEAIVLLHEALEldpDEPEARLNLGLALLK-AG---DYDEALALLE 96

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1191840398 120 KIVdspcpKARHLQFAAAYNLGRAYYEGKGVKRSDEEAERLWLFAADN 167
Cdd:COG4783    97 KAL-----KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
45-146 1.94e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.22  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  45 DKALQLLKE--RIRRGDTLAYFLRGQLYFEEGWYEEALEQFE---EIKEKDHQATYQLGVMYYDgLGtttDAEKGVEYMK 119
Cdd:COG0457    25 EEAIEDYEKalELDPDDAEALYNLGLAYLRLGRYEEALADYEqalELDPDDAEALNNLGLALQA-LG---RYEEALEDYD 100

                          90       100
                  ....*....|....*....|....*..
gi 1191840398 120 KIVdspcpKARHLQFAAAYNLGRAYYE 146
Cdd:COG0457   101 KAL-----ELDPDDAEALYNLGLALLE 122
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 298-332 2.10e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.23  E-value: 2.10e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1191840398  298 AMASFYHARCLQLGLGITKDEATAKHYYSKACRLN 332
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 91-120 4.06e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 34.46  E-value: 4.06e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1191840398   91 HQATYQLGVMYYDGLGTTTDAEKGVEYMKK 120
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKK 30
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 45-123 9.66e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 35.35  E-value: 9.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1191840398  45 DKALQLLKERIRR--GDTL---AYFLRGQLYFEEGWYEEALEQFEEI------KEKDHQATYQLGVMYYDgLGtttDAEK 113
Cdd:COG1729    10 DEAIAAFKAFLKRypNSPLapdALYWLGEAYYALGDYDEAAEAFEKLlkrypdSPKAPDALLKLGLSYLE-LG---DYDK 85

                          90
                  ....*....|
gi 1191840398 114 GVEYMKKIVD 123
Cdd:COG1729    86 ARATLEELIK 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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