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Links from GEO DataSets

Items: 20

1.

Drosophila photoreceptor nuclear RNA-seq timecourse

(Submitter supplied) We report the nuclear transcriptome of Drosophila photoreceptor neurons obtained using a tissue-specific approach at different time points after eclosion
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17275
19 Samples
Download data: TXT
Series
Accession:
GSE174515
ID:
200174515

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Genome-wide distribution of chromatin accessibility and transcriptome of Set2-deficient Drosophila photoreceptor neurons

(Submitter supplied) We report the chromatin accessibility landscape and transcriptome of Drosophila photoreceptor neurons that are Set2-deficient (via siRNA) obtained using a tissue-specific approach from 10-day old flies
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17275
9 Samples
Download data: BW, TXT
Series
Accession:
GSE202053
ID:
200202053

PubMed Full text in PMC Similar studies

3.

Drosophila photoreceptor neuron-specific H3, H3K4me3 and H3K36me3 ChIP-seq from 40-day old flies

(Submitter supplied) We report the genome-wide distribution of H3, H3K4me3 and H3K36me3 from 40-day old flies
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17275
16 Samples
Download data: BW
Series
Accession:
GSE202050
ID:
200202050

PubMed Full text in PMC Similar studies

4.

Drosophila photoreceptor transcriptome landscape upon disruption of Clock activity [Rh1-ClkDN_RNA]

(Submitter supplied) We report the transcriptome landscape of Drosophila photoreceptor neurons obtained using a tissue-specific approach at different time points after eclosion upon expression of a Clock dominant negative mutant
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17275
12 Samples
Download data: TXT
Series
Accession:
GSE184121
ID:
200184121

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5.

Drosophila photoreceptor nuclear RNA-seq timecourse [AgingATACseq]

(Submitter supplied) We report the chromatin accessibility landscape of Drosophila photoreceptor neurons obtained using a tissue-specific approach at different time points after eclosion
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17275
15 Samples
Download data: BW
Series
Accession:
GSE184069
ID:
200184069

PubMed Full text in PMC Similar studies SRA Run Selector

6.

Drosophila photoreceptor chromatin accessibility landscape upon disruption of Clock activity [ClkATACseq]

(Submitter supplied) We report the chromatin accessibility landscape of Drosophila photoreceptor neurons obtained using a tissue-specific approach at different time points after eclosion upon expression of a Clock dominant negative mutant
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17275
12 Samples
Download data: BW
Series
Accession:
GSE183746
ID:
200183746

PubMed Full text in PMC Similar studies SRA Run Selector

7.

Nuclear RNA-seq of Drosophila Top3beta-deficient photoreceptor neurons

(Submitter supplied) We report the nuclear transcriptome of Drosophila Top3beta-deficient photoreceptor neurons obtained using a tissue-specific approach to purify nuclei and express an siRNA against Top3beta or mCherry for negative control
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17275
4 Samples
Download data: TXT
Series
Accession:
GSE174491
ID:
200174491

PubMed Full text in PMC Similar studies SRA Run Selector

8.

Genome-wide R-loop distribution in Drosophila photoreceptor neurons throughout aging

(Submitter supplied) We report the application of R-loop mapping in a cell-type specific context using photoreceptor neurons at different ages, as measured by days post eclosion (Day 10, Day 30 and Day 50). To validate our approach, we also performed R-loop mapping in 10 day old nuclei that were treated with RNAse H1 for 3 hours prior to application of MapR.
Organism:
Drosophila melanogaster
Type:
Other
Platform:
GPL17275
10 Samples
Download data: BW
Series
Accession:
GSE174488
ID:
200174488

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9.

In vivo tissue-specific chromatin profiling in Drosophila melanogaster using GFP-tagged nuclei

(Submitter supplied) We report the application of different chromatin profiling techniques applied to cell-type specific nuclei obtained with a nuclei immuno-enrichment protocol described in this manuscript, referred as NEI protocol. By optimizing these methods, we generated genome-wide datasets associated with the nuclear RNA transcriptome, chromatin accessibility, and distribution of histone H3 and two H3 two lysine tri-methylation marks, H3K4me3 and H3K36me3 respectively. more...
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL25244 GPL17275
29 Samples
Download data: BW, TXT
Series
Accession:
GSE169328
ID:
200169328

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10.

Transcriptional profiling of Drosophila photoreceptors in response to blue light

(Submitter supplied) Purpose: The goal of this study was to characterize the transcript levels of genes in Drosophila photoreceptor neurons in response to blue light. Using transcriptome profiling of isolated photoreceptor nuclei, we analyzed the changes in gene expression that occur in response to 3h of blue light exposure at 1 or 6 days post-eclosion. We identified sets of genes with both up-regulated and down-regulated expression in response to blue light at either age.
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17275
15 Samples
Download data: CSV
Series
Accession:
GSE106820
ID:
200106820

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11.

Transcriptional profiling of Drosophila melanogaster photoreceptors following nuclei affinity enrichment

(Submitter supplied) Purpose: The goal of this study was to globally characterize the transcript levels of genes in Drosophila photoreceptor neurons. Using transcriptome profiling of isolated photoreceptor nuclei from day 10 flies, we identified genes with enriched or reduced transcript levels post nuclei isolation relative to the starting pre-isolation material (whole head RNA extracts).
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17275
6 Samples
Download data: CSV
Series
Accession:
GSE93128
ID:
200093128

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12.

Transcriptional profiling of aged Drosophila photoreceptors

(Submitter supplied) Purpose: The goal of this study was to globally characterize the transcript levels of genes in Drosophila photoreceptor neurons during aging. Using transcriptome profiling of isolated photoreceptor nuclei we analyzed the changes in gene expression that occur during aging over 5 time-points from 10 to 40 days post-eclosion and identified sets of genes with both up-regulated and down-regulated expression.
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17275
15 Samples
Download data: CSV
Series
Accession:
GSE83431
ID:
200083431

PubMed Full text in PMC Similar studies SRA Run Selector

13.

Prolonged blue light exposure mimics age-dependent gene expression changes in white eyed Drosophila photoreceptors

(Submitter supplied) Purpose: The goal of this study was to identify the differential expressed genes in Drosophila photoreceptors with age or upon blue lgiht exposure.
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21306
18 Samples
Download data: TXT
Series
Accession:
GSE184389
ID:
200184389

PubMed Full text in PMC Similar studies SRA Run Selector

14.

Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks

(Submitter supplied) Analysis of cross talk of epigenetic marks in HBEC by using tilling arrays chr19. In Human Bronchial epithelia cells (HBEC), H3K9me3, H4K20me3, H3K4me3, H3K27me3, H3K36me3 and DNA methylation were profiled. In these cells, DNA methylation status was analyzed by MIRA and UnmethylCollector (UMC). Study of epigenetic changes in HCT116 DNMT1-/- and DNMT3b -/- (HCT116-DKO) in comparison to intact HCT116. more...
Organism:
Homo sapiens
Type:
Genome binding/occupancy profiling by genome tiling array; Methylation profiling by genome tiling array
Platform:
GPL11313
17 Samples
Download data: GFF, PAIR
Series
Accession:
GSE26040
ID:
200026040

PubMed Full text in PMC Similar studies Analyze with GEO2R

15.

Crosstalk between gene body DNA methylation, H3K9me3 and H3K36me3 chromatin marks and transcription [HuEx-1_0-st, transcript]

(Submitter supplied) This is one of expressional parts of the study. These data were correlated to epigenetic marks and CG density of genes in analyzed cells. The whole study has a following summary: To elucidate possible roles of DNA methylation and chromatin marks in transcription, we performed epigenetic profiling of chromosome 19 in human bronchial epithelial cells (HBEC) and in the colorectal cancer cell line HCT116 as well as its counterpart with double knockout of DNMT1 and DNMT3B (HCT116-DKO). more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL5175
2 Samples
Download data: CEL
Series
Accession:
GSE26038
ID:
200026038

PubMed Full text in PMC Similar studies Analyze with GEO2R

16.

Crosstalk between gene body DNA methylation, H3K9me3 and H3K36me3 chromatin marks and transcription

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Expression profiling by array; Genome binding/occupancy profiling by genome tiling array; Methylation profiling by genome tiling array
4 related Platforms
24 Samples
Download data: CEL, CHP, GFF, PAIR
Series
Accession:
GSE26020
ID:
200026020

PubMed Full text in PMC Similar studies Analyze with GEO2R

17.

Crosstalk between gene body DNA methylation, H3K9me3 and H3K36me3 chromatin marks and transcription [HuGene-1_0-st]

(Submitter supplied) This is one of expressional parts of the study. These data were correlated to epigenetic marks and CG density of genes in analyzed cells. The whole study has a following summary: To elucidate possible roles of DNA methylation and chromatin marks in transcription, we performed epigenetic profiling of chromosome 19 in human bronchial epithelial cells (HBEC) and in the colorectal cancer cell line HCT116 as well as its counterpart with double knockout of DNMT1 and DNMT3B (HCT116-DKO). more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL6244
3 Samples
Download data: CEL, CHP
Series
Accession:
GSE26019
ID:
200026019

PubMed Full text in PMC Similar studies Analyze with GEO2R

18.

Crosstalk between gene body DNA methylation, H3K9me3 and H3K36me3 chromatin marks and transcription [HuEx-1_0-st]

(Submitter supplied) This is one of expressional parts of the study. These data were correlated to epigenetic changes and CG density of genes in analyzed cells. The whole study has a following summary: To elucidate possible roles of DNA methylation and chromatin marks in transcription, we performed epigenetic profiling of chromosome 19 in human bronchial epithelial cells (HBEC) and in the colorectal cancer cell line HCT116 as well as its counterpart with double knockout of DNMT1 and DNMT3B (HCT116-DKO). more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL5188
2 Samples
Download data: CEL, CHP
Series
Accession:
GSE26018
ID:
200026018

PubMed Full text in PMC Similar studies Analyze with GEO2R

19.

Differential splicing events in aging Drosophila eye

(Submitter supplied) Purpose: The goal of this study was to identify differential splicing events in the Drosophila eye during aging.
Organism:
Drosophila melanogaster
Type:
Expression profiling by high throughput sequencing; Other
Platform:
GPL17275
6 Samples
Download data: CSV, TXT
Series
Accession:
GSE106652
ID:
200106652

PubMed Full text in PMC Similar studies SRA Run Selector

20.

Absolute quantification of proteins and histone modifications in Drosophila embryos reveals stoichiometric relationships in chromatin regulation

(Submitter supplied) High-level H3K27me3 domains are required for proper gene repression mediated by Polycomb proteins. Genome-wide profiling of H3K27 methylation during developmental progression and in animals with reduced PRC2 levels illustrates how mass spectrometry-based normalization permits the quantitative analysis of changes in chromatin states.
Organism:
Drosophila melanogaster
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL17275 GPL19132
10 Samples
Download data: BEDGRAPH
Series
Accession:
GSE114832
ID:
200114832

PubMed Similar studies SRA Run Selector

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