Similar studies for GEO DataSets (Select 200063947) - GEO DataSets

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Items: 20

Select item 2000639471.

Transcriptome comparison of ectomycorrhizal, ericoid and orchid mycorrhizal fungi

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Piloderma croceum; Serendipita vermifera; Paxillus involutus; Suillus luteus; Amanita muscaria; Hebeloma cylindrosporum; Oidiodendron maius; Tulasnella calospora

Type:: Expression profiling by high throughput sequencing

10 related Platforms
42 Samples

Download data: TXT

Series

Accession:: GSE63947

ID:: 200063947

PubMed Full text in PMC Similar studies

Select item 2000839092.

Gene expression changes in Cenococcum geophilum-Pinus sylvestris ectomycorrhizal roots compared to Cenococcum geophilum free-living mycelium

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Cenococcum geophilum ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 3 months, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Cenococcum geophilum (http://genome.jgi.doe.gov/Cenge3/Cenge3.home.html) reference transcripts using CLC Genomics Workbench 6.

Organism:: Cenococcum geophilum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL22097
6 Samples

Download data: TXT

Series

Accession:: GSE83909

ID:: 200083909

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000639293.

Sepula lacrymans interacting with tree roots

(Submitter supplied) This study characterizes the transcriptomic alterations of Serpula lacrymans in contact with tree roots compared to the transcriptome of free-living mycelium.

Organism:: Serpula lacrymans var. lacrymans S7.9

Type:: Expression profiling by array

Platform:: GPL13241
6 Samples

Download data: PAIR

Series

Accession:: GSE63929

ID:: 200063929

Select item 2000639264.

Gene expression changes in Suillus luteus- Pinus sylvestris ectomycorrhizal roots compared to Suillus luteus free-living mycelium

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Suillus luteus ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 40 days, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Suillus luteus (http://genome.jgi-psf.org/Suilu1/Suilu1.home.html) using CLC Genomics Workbench 6.

Organism:: Suillus luteus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19513
4 Samples

Download data: TXT

Series

Accession:: GSE63926

ID:: 200063926

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Select item 2000639255.

Gene expression changes in Piloderma croceum-Quercus robur ectomycorrhizal roots compared to Piloderma croceum free-living mycelium

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Piloderma croceum ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 8 weeks, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Piloderma croceum (http://genome.jgi-psf.org/Pilcr1/Pilcr1.home.html) using CLC Genomics Workbench 6.

Organism:: Piloderma croceum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19512
6 Samples

Download data: TXT

Series

Accession:: GSE63925

ID:: 200063925

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Select item 2000639246.

Gene expression changes in Paxillus involutus- Betula pendula ectomycorrhizal roots compared to Paxillus involutus mycelium patches

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Paxillus involutus ectomycorrhizal roots compared to mycelium patches . Mycorrhizal roots were harvested after 4 weeks, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Paxillus involutus (http://genome.jgi-psf.org/Paxin1/Paxin1.home.html) using CLC Genomics Workbench 6.

Organism:: Paxillus involutus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19511
4 Samples

Download data: TXT

Series

Accession:: GSE63924

ID:: 200063924

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Select item 2000639237.

Gene expression changes in Sebacina vermifera- Arabidopsis thaliana mycorrhizal roots compared to Sebacina vermifera free-living mycelium

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Sebacina vermifera mycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 3, 7 and 14 days, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Sebacina vermifera (http://genome.jgi-psf.org/Sebve1/Sebve1.home.html) using CLC Genomics Workbench 6.

Organism:: Serendipita vermifera

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19510
6 Samples

Download data: TXT

Series

Accession:: GSE63923

ID:: 200063923

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Select item 2000639228.

Gene expression changes in Oidiodendron maius- Vaccinium myrtillus mycorrhizal roots compared to Oidiodendron maius free-living mycelium

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Oidiodendron maius mycorrhizal roots compared to free-living mycelium . Mycorrhizal roots and control mycelium were harvested after 45 days and used for RNA extraction. Reads of 2X100bp were generated and aligned to Oidiodendron maius transcripts (http://genome.jgi-psf.org/Oidma1) using CLC Genomics Workbench 6.

Organism:: Oidiodendron maius

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19509
6 Samples

Download data: TXT

Series

Accession:: GSE63922

ID:: 200063922

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000638699.

Gene expression changes in Tulasnella calospora- Serapias vomeracea mycorrhizal protocorms compared to Tulasnella calospora free-living mycelium

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Tulasnella calospora mycorrhizal protocorms compared to free-living mycelium . Protocorms and control mycelium were harvested after 30 days and used for RNA extraction. Reads of 2X100bp were generated and aligned to Tulasnella calospora transcripts (http://genome.jgi-psf.org/Tulca1) using CLC Genomics Workbench 6.

Organism:: Tulasnella calospora

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19502
6 Samples

Download data: TXT

Series

Accession:: GSE63869

ID:: 200063869

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Select item 20006386810.

Gene expression changes in Hebeloma cylindrosporum- Pinus pinaster ectomycorrhizal root tips compared to Hebeloma cylindrosporum free-living mycelium

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Hebeloma cylindrosporum ectomycorrhizal root tips compared to free-living mycelium . Ectomycorrhizal root tips and control mycelium were harvested after 3 weeks and used for RNA extraction. Reads of 150 bp were generated and aligned to Hebeloma cylindrosporum transcripts (http://genome.jgi-psf.org/Hebcy2) using CLC Genomics Workbench 7.

Organism:: Hebeloma cylindrosporum

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL19500 GPL19501
6 Samples

Download data: TXT

Series

Accession:: GSE63868

ID:: 200063868

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20006386711.

Gene expression changes in Amanita muscaria- Populus tremula x tremuloides ectomycorrhizal root tips compared to Amanita muscaria free-living mycelium

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Amanita muscaria ectomycorrhizal root tips compared to free-living mycelium . Ectomycorrhizal root tips and control mycelium were harvested after 6 weeks and used for RNA extraction. Reads of 150 bp were generated and aligned to Amanita muscaria transcripts (http://genome.jgi-psf.org/Amamu1) using CLC Genomics Workbench 7.

Organism:: Amanita muscaria

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL19499 GPL19498
4 Samples

Download data: TXT

Series

Accession:: GSE63867

ID:: 200063867

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Select item 20006222612.

Laccaria-Douglas fir: A Timecourse of Mycorrhizal Root Tip Development

(Submitter supplied) This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with Pseudotsuga menziesii. Three time-points were analyzed, two weeks, four weeks and six weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicolor S238N.

Organism:: Laccaria bicolor; Laccaria bicolor S238N-H82; Pseudotsuga menziesii

Type:: Expression profiling by array

Platform:: GPL14641
12 Samples

Download data: PAIR

Series

Accession:: GSE62226

ID:: 200062226

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20006222513.

Laccaria-Poplar: A Timecourse of Mycorrhizal Root Tip Development

(Submitter supplied) This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with P. trichocarpa. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicolor S238N

Organism:: Populus trichocarpa; Laccaria bicolor S238N-H82; Laccaria bicolor

Type:: Expression profiling by array

Platform:: GPL14641
19 Samples

Download data: PAIR

Series

Accession:: GSE62225

ID:: 200062225

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Select item 20002783914.

Serpula lacrymans gene expression on different substrates

(Submitter supplied) Transcript profiles of Serpula lacrymans grown on different substrates were analyzed. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, department of energy) Serpula lacrymans genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models under various conditions. Another goal was to compare gene expression profiles from Serpula lacrymans grown on liquid MMN medium and on wood.

Organism:: Serpula lacrymans var. lacrymans S7.9

Type:: Expression profiling by array

Platform:: GPL13241
9 Samples

Download data: PAIR

Series

Accession:: GSE27839

ID:: 200027839

Select item 20001752915.

Tuber melanosporum gene expression in different tissues

(Submitter supplied) The Transcriptome of different tissues and developmental stages of Tuber melanosporum was analyzed. The array probes were designed from gene models taken from the French Genoscope - Centre National de Séquençage Tuber melanosporum genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and to use this transcriptional information to confirm, to correct or to reject gene models. more...

Organism:: Corylus avellana; Tuber melanosporum

Type:: Expression profiling by array

Platform:: GPL8982
16 Samples

Download data: TXT

Series

Accession:: GSE17529

ID:: 200017529

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20000978416.

Laccaria bicolor S238N gene expression in different tissues

(Submitter supplied) The Transcriptome of different tissues and developmental stages of Laccaria bicolor S238N was analyzed. The array probes were designed from gene models taken from the Joint Genome institute Laccaria bicolor genome sequence version1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and to use this transcriptional information to confirm, to correct or to reject gene models. more...

Organism:: Populus tremula x Populus alba; Pseudotsuga menziesii; Populus trichocarpa; Laccaria bicolor; Laccaria bicolor S238N-H82

Type:: Expression profiling by array

Platform:: GPL6192
11 Samples

Download data: TXT

Series

Accession:: GSE9784

ID:: 200009784

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Select item 20002905017.

The transcriptome of poplar roots incubated with MiSSP7, a secreted effector protein of Laccaria bicolor

(Submitter supplied) To investigate which genes are affected by MiSSP7, a secreted effector protein of Laccaria bicolor, we analyzed the transcriptomes of poplar roots incubated with MiSSP7 protein.

Organism:: Populus tremula x Populus alba; Populus trichocarpa

Type:: Expression profiling by array

Platform:: GPL13485
6 Samples

Download data: PAIR

Series

Accession:: GSE29050

ID:: 200029050

Select item 20005686518.

Effect of Laccaria bicolor, MiSSP7 from L.bicolor and Jasmonic acid on the Poplar transcriptome

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Populus trichocarpa; Populus tremula x Populus tremuloides; Populus tremula x Populus alba

Type:: Expression profiling by array; Expression profiling by high throughput sequencing

Platforms:: GPL18583 GPL13485
40 Samples

Download data: PAIR, TXT

Series

Accession:: GSE56865

ID:: 200056865

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20005686419.

Effect of Methyl jasmonate of the Poplar root transcriptome

(Submitter supplied) Illumina HiSeq technology was used to generate mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate. Samples were harvested after two weeks either from untreated control roots or from Methyl jasmonate treated roots. Paired-end (2X100bp) reads were generated and aligned to the Populus trichocarpa (http://www.phytozome.net/poplar.php) using CLC Genomics Workbench 6.

Organism:: Populus tremula x Populus alba

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18583
4 Samples

Download data: TXT

Series

Accession:: GSE56864

ID:: 200056864

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20005686320.

Effect of MiSSP7 overexpression on the Poplar root transcriptome

(Submitter supplied) The Poplar transcriptome was analyzed in Populus tremulaxPopulus alba clone 717-1B4 control roots and in two poplar lines overexpressing MiSSP7.

Organism:: Populus trichocarpa; Populus tremula x Populus alba

Type:: Expression profiling by array

Platform:: GPL13485
9 Samples

Download data: PAIR, TXT

Series

Accession:: GSE56863

ID:: 200056863

PubMed Full text in PMC Similar studies Analyze with GEO2R

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