|
| Status |
Public on Aug 01, 2016 |
| Title |
Gene expression changes in Cenococcum geophilum-Pinus sylvestris ectomycorrhizal roots compared to Cenococcum geophilum free-living mycelium |
| Organism |
Cenococcum geophilum |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Illumina HiSeq technology was used to generate mRNA profiles from Cenococcum geophilum ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 3 months, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Cenococcum geophilum (http://genome.jgi.doe.gov/Cenge3/Cenge3.home.html) reference transcripts using CLC Genomics Workbench 6.
|
| |
|
| Overall design |
mRNA profiles from Cenococcum geophilum ectomycorrhizal roots and free-living mycelium were generated by paired-end (2x100bp) Illumina HiSeq2000 sequencing. Three biological replicates were sequenced for mycorrhizal and mycelium samples.
|
| |
|
| Contributor(s) |
Peter M, Kohler A, Martin F |
| Citation(s) |
27601008, 28923004 |
| Submission date |
Jun 30, 2016 |
| Last update date |
Jul 30, 2019 |
| Contact name |
Annegret Kohler |
| E-mail(s) |
annegret.kohler@inrae.fr
|
| Phone |
+33 (0)383 394072
|
| Organization name |
INRAE
|
| Department |
UMR 1136
|
| Lab |
Interactions Arbres/Micro-organismes
|
| Street address |
Centre INRAE Grand Est Nancy
|
| City |
Champenoux |
| ZIP/Postal code |
54280 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL22097 |
Illumina HiSeq 2000 (Cenococcum geophilum) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA327385 |
| SRA |
SRP077651 |
Less...
More...