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| Status |
Public on Feb 06, 2015 |
| Title |
Gene expression changes in Sebacina vermifera- Arabidopsis thaliana mycorrhizal roots compared to Sebacina vermifera free-living mycelium |
| Organism |
Serendipita vermifera |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Illumina HiSeq technology was used to generate mRNA profiles from Sebacina vermifera mycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 3, 7 and 14 days, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Sebacina vermifera (http://genome.jgi-psf.org/Sebve1/Sebve1.home.html) using CLC Genomics Workbench 6.
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| Overall design |
mRNA profiles from Sebacina vermifera mycorrhizal roots and free-living mycelium were generated by paired-end (2x100bp) Illumina HiSeq2000 sequencing. Three biological replicates were sequenced for mycorrhizal and mycelium samples.
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| |
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| Contributor(s) |
Din Y, Lahrmann U, Zuccaro A, Kohler A, Martin F |
| Citation(s) |
25706625, 28923004, 29765384 |
| |
| Submission date |
Dec 05, 2014 |
| Last update date |
Aug 13, 2019 |
| Contact name |
Annegret Kohler |
| E-mail(s) |
annegret.kohler@inrae.fr
|
| Phone |
+33 (0)383 394072
|
| Organization name |
INRAE
|
| Department |
UMR 1136
|
| Lab |
Interactions Arbres/Micro-organismes
|
| Street address |
Centre INRAE Grand Est Nancy
|
| City |
Champenoux |
| ZIP/Postal code |
54280 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL19510 |
Illumina HiSeq 2000 (Serendipita vermifera) |
|
| Samples (6)
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| This SubSeries is part of SuperSeries: |
| GSE63947 |
Transcriptome comparison of ectomycorrhizal, ericoid and orchid mycorrhizal fungi |
|
| Relations |
| BioProject |
PRJNA269502 |
| SRA |
SRP050866 |
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