GEO DataSets

(Submitter supplied) To investigate the underlying mechanisms that which genes involving in M. oryzae peroxisome dynamics in response to oxidative stress.

Organism:

Oryza sativa; Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL33328 GPL32309

6 Samples

Download data: XLS

(Submitter supplied) A putative EAF3/MRG15 ortholog N1617, containing chromo and MRG domain, is a partner of Ash1 in Magnaporthe oryzae

Organism:

Pyricularia oryzae

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL32309

43 Samples

Download data: BEDGRAPH, TXT

(Submitter supplied) A putative EAF3/MRG15 ortholog N1617, containing chromo and MRG domain, is a partner of Ash1 in Magnaporthe oryzae

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32309

12 Samples

Download data: TXT

(Submitter supplied) Di- and tri-methylation of lysine 36 on histone H3 (H3K36me2/3) are catalyzed by SET2 histone methyltransferase which play an important role in transcriptional elongation.we reveal a novel mechanism by which H3K36me2 and H3K36me3 associates with opposite transcriptional activity and Ash1 is required for the normal distribution of facultative heterochromatic modifications and stable maintenance of transcriptional silencing in eukaryotes.

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29717

12 Samples

Download data: TXT

(Submitter supplied) Di- and tri-methylation of lysine 36 on histone H3 (H3K36me2/3) are catalyzed by SET2 histone methyltransferase which play an important role in transcriptional elongation.we reveal a novel mechanism by which H3K36me2 and H3K36me3 associates with opposite transcriptional activity and Ash1 is required for the normal distribution of facultative heterochromatic modifications and stable maintenance of transcriptional silencing in eukaryotes.

Organism:

Pyricularia oryzae

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL29717

26 Samples

Download data: BEDGRAPH, TXT

(Submitter supplied) To investigate the function of Momet2 in Magnaporthe oryzae, we generated Momet2 mutant. To understand the impact of MoMET2-depentent 5mC to gene expression at the transcriptional level, we performed comparative transcriptome analysis using the materials harvested from Guy11 and ΔMomet2 mycelium samples.

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32309

4 Samples

Download data: TXT

(Submitter supplied) We report different roles of three PRC2 components, KMT6, P55 and SIN3 played in distribution of genome-wide H3K27 tri-methylation of Pyricularia oryzae. Polycomb repressive complex 2 (PRC2), which is composed of Ezh(Kmt6), Su(z)12, Esc(Eed) and accessory subunits RbAp48/Nurf55(P55), catalyzes the methylation of histone H3 at lysine 27. Loss of P55 caused severe global defects in the normal distribution of H3K27me3 and transcriptional reprogramming on the H3K27me3-occupied genes. more...

Organism:

Pyricularia oryzae

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL29717

16 Samples

Download data: BEDGRAPH, TXT

(Submitter supplied) Magnaporthe oryzae is notorious for its efficient evolution as a plant pathogen. Analysis of well organised fungal pathogenic mechanisms would enable the scientific understanding to fight against pathogens. Histidine phosphotransferase in fungal systems are good targets for antifungals since they are component of SAPK pathway, which is essential for survival of the fungus. The histidine Phosphotransferase YPD1 in M. more...

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL31161

2 Samples

Download data: XLSX

(Submitter supplied) Effector gene regulation by H3K27me3 and MoGti1

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL29275

48 Samples

Download data: TDF, TXT

(Submitter supplied) Identification of the difference of the pre-mRNA in the wild type and mutant strain

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26389

4 Samples

Download data: TXT

(Submitter supplied) Cytosine methylation is a conserved base modification, but explanations for its interspecific variation remain elusive. Only through taxonomic sampling of disparate groups can unifying explanations for interspecific variation be thoroughly tested. Here we leverage phylogenetic resolution of cytosine DNA methyltransferases (DNA MTases) and genome evolution to better understand widespread interspecific variation across 40 diverse fungal species. more...

Organism:

Saccharomyces cerevisiae; Aspergillus flavus; Coprinopsis cinerea; Clavispora lusitaniae; Lobosporangium transversale; Radiomyces spectabilis; Flammula alnicola; Cryptococcus neoformans var. grubii; Candidozyma auris; Pyricularia oryzae KJ201; Syncephalis fuscata; Podospora anserina; Phanerodontia chrysosporium; Phycomyces blakesleeanus; Fusarium fujikuroi; Neurospora crassa; Pleurotus ostreatus; Aureobasidium pullulans; Laccaria bicolor; Uncinocarpus reesii; Parasitella parasitica; Botrytis cinerea; Tilletiopsis washingtonensis; Agaricus bisporus; Mixia osmundae; Sporobolomyces roseus; Cordyceps militaris; Wolfiporia cocos; Spinellus fusiger; Hesseltinella vesiculosa; Microbotryum lychnidis-dioicae; Heterobasidion irregulare; Plenodomus lingam; Candida albicans; Coemansia reversa; Postia placenta; Coemansia spiralis; Kirkomyces cordensis; Metarhizium robertsii; Pseudogymnoascus destructans

Type:

Methylation profiling by high throughput sequencing; Third-party reanalysis

29 related Platforms

31 Samples

Download data: TSV, TXT, XLS

(Submitter supplied) We created a mutant in the MAP kinase-encoding Pmk1 gene of the rice blast fungus Magnaporthe oryzae (pmk1AS) that renders the gene sensitive to inhibition by 1NA-PP1. Fungal gene expression was compared during infection of rice sheath by the M. oryzae pmk1AS mutant in the presence and absence of 1NA-PP1.

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18618

6 Samples

Download data: TXT

(Submitter supplied) RNAi is a conserved mechanism in eukaryotic organisms and has been the subject of recent attention pertaining to many animal and plant models. But research related to fungal systems is limited, especially in plant pathogenic models. The present study was undertaken to examine the involvement of RNAi components on the biogenesis of small RNAs and their impact on growth and pathogenicity of the plant pathogenic model organism Magnaporthe oryzae. more...

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL16530

36 Samples

Download data: TXT

(Submitter supplied) In order to understand the mechanisms of Nitrogen induced susceptibility (NIS) we’ve conducted a dual RNAseq experiment on rice infected tissues by Magnaporthe oryzae. At 0 day post inoculation and 2 days post inoculation tissues have been collected on mock inoculated and M. oryzae inoculated plants. Rice were conducted under two type of nitrogen fertilization: 0N all fertilization but nitrogen, 1N all fertilization and NH4NO3. more...

Organism:

Oryza sativa; Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL16530 GPL13160

24 Samples

Download data: GFF, TXT

(Submitter supplied) In order to understand the mechanisms of Drought induced susceptibility (DIS) we’ve conducted a dual RNAseq experiment on rice infected tissues by Magnaporthe oryzae. At 4 days post inoculation tissues have been collected on mock inoculated and M. oryzae inoculated plants. Rice were conducted under two type of water regime: DIS Drought during three days before inoculation, NoDIS no drought before inoculation. more...

Organism:

Oryza sativa; Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL16530 GPL13160

18 Samples

Download data: TXT

(Submitter supplied) Purpose: The goals of this study are to find out the genes regulated directly or indirectly by the regulatory factor X protein MoRfx1 by RNA-seq in the rice blast fungus Methods: Mycelial mRNAs of the wild type strain 70-15, ΔMorfx1 incubated in H2O at 25˚C for 4 h, in triplicate independently for each strain, were extracted and isolated by RNeasy Plant mini kit (QIAGEN) and AMPure XP beads (Beckman). more...

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18618

6 Samples

Download data: TXT

(Submitter supplied) Cytosine methylation is an important epigenetic modification of DNA that is involved in genome defense and transcriptional regulation in eukaryotes. Despite extensive efforts to understand genome-wide distribution and function of DNA methylation in mammals and plants, contribution of DNA methylation to biology of microbial eukaryotes is largely unknown to date. Here we used genetic manipulations and high-throughput bisulphite sequencing on the model plant pathogenic fungus, Magnaporthe oryzae to elucidate the dynamics and mechanics of DNA methylation during pathogenic development.

Organism:

Pyricularia oryzae KJ201

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL16559

5 Samples

Download data: TXT

(Submitter supplied) Cytosine methylation is an important epigenetic modification of DNA that is involved in genome defense and transcriptional regulation in eukaryotes. Contribution of DNA methylation to biology of microbial eukaryotes is largely unknown to date. Here we used RNA-seq to examine the impact of DNA methylation on transcriptional output in the genome of a model pathogenic fungus, Magnaporthe oryzae by comparing expression profiles of wild-type and methylation-deficient mutant strains.

Organism:

Pyricularia oryzae KJ201

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16559

3 Samples

Download data: TXT

(Submitter supplied) Purpose: The goals of this study are to find out the genes regulated directly or indirectly by Zn2Cys6 transcription factors Cnf2 and Gpf1 by RNA-seq and to evaluate the similarities and differences in gene regulation mechanisms of Cnf2 and Gpf1 in the rice blast fungus Methods: Mycelial mRNAs of the wild type strain 70-15, mutants Δgpf1 (01F1-1) and Δcnf2 (03C7-2) incubated in H2O at 25˚C for 4 h, in triplicate independently for each strain, were extracted and isolated by RNeasy Plant mini kit (QIAGEN) and AMPure XP beads (Beckman). more...

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18618

9 Samples

Download data: TXT

(Submitter supplied) Plants and animals have evolved a first line of defense response to pathogens called innate or basal immunity. While basal defenses in these organisms are well studied, there is almost a complete lack of understanding of such systems in fungal species, and more specifically, how they are able to detect and mount a defense response upon pathogen attack. Hence, the goal of the present study was to understand how fungi respond to biotic stress by assessing the transcriptional profile of the rice blast pathogen, Magnaporthe oryzae, when challenged with the bacterial antagonist Lysobacter enzymogenes. more...

Organism:

Pyricularia oryzae

Type:

Expression profiling by high throughput sequencing

Platform:

GPL16530

12 Samples

Download data: TXT, XLSX