nsv5716506
- Organism: Homo sapiens
- Study:nstd211 (Chuang et al. 2021)
- Variant Type:mobile element insertion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Description:Insertion of a Alu mobile element relative to the reference
- Publication(s):Chuang et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 436 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 434 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 24 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5716506 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 148,795,833 | 148,795,833 | ||
| nsv5716506 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 147,877,357 | 147,877,357 |
| nsv5716506 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 4,320,230 | 4,320,230 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17224712 | alu insertion | Sequencing | Other |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17224712 | Submitted genomic | NC_000023.11:g.148 795833_148795834in s279 | GRCh38 (hg38) | NC_000023.11 | ChrX | 148,795,833 | 148,795,833 | ||
| nssv17224712 | Remapped | Perfect | NW_004070890.2:g.4 320230_4320231ins2 79 | GRCh37.p13 | First Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | 4,320,230 | 4,320,230 |
| nssv17224712 | Remapped | Perfect | NC_000023.10:g.147 877357_147877358in s279 | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 147,877,357 | 147,877,357 |