nstd211 (Chuang et al. 2021)
- Organism:
- Human
- Study Type:
- Collection
- Submitter:
- Scott Devine
- Description:
- We discovered and genotyped mobile element insertions in high coverage, Illumina whole genome sequences from the 1000 Genomes Project. See Variant Summary counts for nstd211 in dbVar Variant Summary.
- Project:
- PRJNA723884
- Publication(s):
- Chuang et al. 2021
Detailed Information: Download 56732 Variant Regions, Download 79820 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted: GRCh38.p9 (hg38)
Remapped: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 4,344 | 6,078 | Submitted | NC_000001.11 |
| NC_000002.12 | Chr2 | 4,820 | 6,800 | Submitted | NC_000002.12 |
| NC_000003.12 | Chr3 | 4,110 | 5,840 | Submitted | NC_000003.12 |
| NC_000004.12 | Chr4 | 4,131 | 5,848 | Submitted | NC_000004.12 |
| NC_000005.10 | Chr5 | 3,719 | 5,219 | Submitted | NC_000005.10 |
| NC_000006.12 | Chr6 | 3,568 | 5,060 | Submitted | NC_000006.12 |
| NC_000007.14 | Chr7 | 3,200 | 4,530 | Submitted | NC_000007.14 |
| NC_000008.11 | Chr8 | 2,854 | 4,042 | Submitted | NC_000008.11 |
| NC_000009.12 | Chr9 | 2,361 | 3,310 | Submitted | NC_000009.12 |
| NC_000010.11 | Chr10 | 2,607 | 3,694 | Submitted | NC_000010.11 |
| NC_000011.10 | Chr11 | 2,688 | 3,840 | Submitted | NC_000011.10 |
| NC_000012.12 | Chr12 | 2,720 | 3,865 | Submitted | NC_000012.12 |
| NC_000013.11 | Chr13 | 2,107 | 2,999 | Submitted | NC_000013.11 |
| NC_000014.9 | Chr14 | 1,923 | 2,712 | Submitted | NC_000014.9 |
| NC_000015.10 | Chr15 | 1,596 | 2,252 | Submitted | NC_000015.10 |
| NC_000016.10 | Chr16 | 1,322 | 1,791 | Submitted | NC_000016.10 |
| NC_000017.11 | Chr17 | 1,505 | 2,079 | Submitted | NC_000017.11 |
| NC_000018.10 | Chr18 | 1,595 | 2,245 | Submitted | NC_000018.10 |
| NC_000019.10 | Chr19 | 969 | 1,301 | Submitted | NC_000019.10 |
| NC_000020.11 | Chr20 | 1,200 | 1,643 | Submitted | NC_000020.11 |
| NC_000021.9 | Chr21 | 790 | 1,109 | Submitted | NC_000021.9 |
| NC_000022.11 | Chr22 | 609 | 832 | Submitted | NC_000022.11 |
| NC_000023.11 | ChrX | 1,964 | 2,696 | Submitted | NC_000023.11 |
| NC_000024.10 | ChrY | 19 | 21 | Submitted | NC_000024.10 |
| KI270905.1 | Chr15|KI270905.1 | 1 | 1 | Submitted | KI270905.1 |
| KI270728.1 | Chr16|KI270728.1 | 5 | 8 | Submitted | KI270728.1 |
| GL000256.2 | Chr6|GL000256.2 | 2 | 2 | Submitted | GL000256.2 |
| GL000251.2 | Chr6|GL000251.2 | 1 | 1 | Submitted | GL000251.2 |
| KI270803.1 | Chr7|KI270803.1 | 1 | 1 | Submitted | KI270803.1 |
| KI270846.1 | Chr14|KI270846.1 | 1 | 1 | Submitted | KI270846.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 4,291 | 6,014 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 4,797 | 6,773 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 4,056 | 5,773 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 4,129 | 5,845 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 3,689 | 5,188 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 3,539 | 5,023 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 3,155 | 4,471 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 2,843 | 4,027 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 2,343 | 3,287 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 2,553 | 3,630 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 2,686 | 3,838 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 2,698 | 3,839 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 2,079 | 2,968 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 1,907 | 2,691 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 1,582 | 2,236 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 1,305 | 1,770 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 1,474 | 2,038 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 1,590 | 2,239 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 937 | 1,258 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 1,097 | 1,511 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 762 | 1,070 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 545 | 757 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 1,955 | 2,684 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 22 | 24 | Remapped | NC_000024.9 |
| NT_113923.1 | Unplaced|NT_113923.1 | 3 | 4 | Remapped | NT_113923.1 |
| NT_167227.1 | Unplaced|NT_167227.1 | 1 | 2 | Remapped | NT_167227.1 |
| NT_167213.1 | Unplaced|NT_167213.1 | 1 | 2 | Remapped | NT_167213.1 |
| NT_167225.1 | Unplaced|NT_167225.1 | 4 | 5 | Remapped | NT_167225.1 |
| NT_167226.1 | Unplaced|NT_167226.1 | 3 | 4 | Remapped | NT_167226.1 |
| NT_167229.1 | Unplaced|NT_167229.1 | 1 | 1 | Remapped | NT_167229.1 |
| NT_167211.1 | Unplaced|NT_167211.1 | 2 | 3 | Remapped | NT_167211.1 |
| NT_167223.1 | Unplaced|NT_167223.1 | 1 | 2 | Remapped | NT_167223.1 |
| NT_167228.1 | Unplaced|NT_167228.1 | 2 | 3 | Remapped | NT_167228.1 |
| NT_167231.1 | Unplaced|NT_167231.1 | 2 | 4 | Remapped | NT_167231.1 |
| NT_167233.1 | Unplaced|NT_167233.1 | 2 | 2 | Remapped | NT_167233.1 |
| NT_167207.1 | Chr1|NT_167207.1 | 4 | 6 | Remapped | NT_167207.1 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 1 | 2 | Remapped | NW_003315903.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 2 | 3 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 91 | 120 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 20 | 24 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 13 | 19 | Remapped | NW_003871057.1 |
| NW_004070865.1 | Chr1|NW_004070865.1 | 1 | 1 | Remapped | NW_004070865.1 |
| NW_003571031.1 | Chr2|NW_003571031.1 | 1 | 1 | Remapped | NW_003571031.1 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 8 | 11 | Remapped | NW_003571032.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 4 | 7 | Remapped | NW_004504299.1 |
| NW_003315910.1 | Chr3|NW_003315910.1 | 3 | 3 | Remapped | NW_003315910.1 |
| NW_003315911.1 | Chr3|NW_003315911.1 | 1 | 2 | Remapped | NW_003315911.1 |
| NW_003315912.1 | Chr3|NW_003315912.1 | 2 | 2 | Remapped | NW_003315912.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 6 | 9 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 4 | 4 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 1 | 1 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 2 | 2 | Remapped | NW_004775426.1 |
| NT_113885.1 | Chr4|NT_113885.1 | 4 | 6 | Remapped | NT_113885.1 |
| NT_113888.1 | Chr4|NT_113888.1 | 1 | 2 | Remapped | NT_113888.1 |
| NT_167250.1 | Chr4|NT_167250.1 | 1 | 1 | Remapped | NT_167250.1 |
| NW_003315916.1 | Chr4|NW_003315916.1 | 3 | 6 | Remapped | NW_003315916.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 6 | 7 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 6 | 8 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 19 | 26 | Remapped | NW_004775427.1 |
| NT_113948.1 | Chr5|NT_113948.1 | 1 | 2 | Remapped | NT_113948.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 5 | 8 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 7 | 11 | Remapped | NW_004775428.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 2 | 2 | Remapped | NT_167246.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 2 | 2 | Remapped | NT_167248.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 10 | 15 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 4 | 5 | Remapped | NW_004070866.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 7 | 8 | Remapped | NW_004504300.1 |
| NW_004775429.1 | Chr6|NW_004775429.1 | 2 | 3 | Remapped | NW_004775429.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 4 | 6 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 3 | 6 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 4 | 5 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 20 | 33 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 3 | 4 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 40 | 47 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 12 | 15 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 5 | 7 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 5 | 6 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 1 | 1 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 6 | 9 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 1 | 1 | Remapped | NW_003871066.2 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 2 | 3 | Remapped | NW_004775431.1 |
| NT_113914.1 | Chr9|NT_113914.1 | 5 | 8 | Remapped | NT_113914.1 |
| NT_113916.2 | Chr9|NT_113916.2 | 2 | 3 | Remapped | NT_113916.2 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 4 | 6 | Remapped | NW_003315925.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 1 | 1 | Remapped | NW_003871067.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 2 | 3 | Remapped | NW_004504301.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 9 | 12 | Remapped | NW_003315932.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 1 | 1 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 28 | 37 | Remapped | NW_003871068.1 |
| NW_003871070.1 | Chr10|NW_003871070.1 | 3 | 4 | Remapped | NW_003871070.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 12 | 14 | Remapped | NW_003871071.1 |
| NW_004070870.1 | Chr10|NW_004070870.1 | 1 | 1 | Remapped | NW_004070870.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 10 | 14 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 33 | 46 | Remapped | NW_004775432.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 3 | 5 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 3 | 5 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 8 | 11 | Remapped | NW_003871072.2 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 10 | 15 | Remapped | NW_003871075.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 1 | 2 | Remapped | NW_003871076.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 7 | 10 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 8 | 13 | Remapped | NW_003871079.1 |
| NW_003871080.1 | Chr11|NW_003871080.1 | 5 | 8 | Remapped | NW_003871080.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 2 | 2 | Remapped | NW_003871081.1 |
| NW_003871082.1 | Chr11|NW_003871082.1 | 1 | 2 | Remapped | NW_003871082.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 5 | 5 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 1 | 2 | Remapped | NW_003315937.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 4 | 5 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 6 | 6 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 6 | 6 | Remapped | NW_004504303.2 |
| NW_003571051.1 | Chr13|NW_003571051.1 | 2 | 4 | Remapped | NW_003571051.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 16 | 20 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 1 | 2 | Remapped | NW_003871084.1 |
| NT_113941.1 | Chr17|NT_113941.1 | 1 | 1 | Remapped | NT_113941.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 7 | 11 | Remapped | NW_003315947.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 6 | 9 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 14 | 18 | Remapped | NW_003315950.2 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 11 | 15 | Remapped | NW_003571052.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 1 | 1 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 2 | 2 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 2 | 3 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 4 | 4 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 2 | 3 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 3 | 5 | Remapped | NW_004166864.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 7 | 10 | Remapped | NW_004775433.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 17 | 24 | Remapped | NW_003571053.2 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 4 | 5 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 29 | 39 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 9 | 13 | Remapped | NW_004775434.1 |
| NW_003871095.1 | Chr20|NW_003871095.1 | 1 | 2 | Remapped | NW_003871095.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 6 | 7 | Remapped | NW_004504304.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 2 | 3 | Remapped | NW_003315968.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 7 | 8 | Remapped | NW_004775435.1 |
| NT_113961.1 | Chr22|NT_113961.1 | 8 | 12 | Remapped | NT_113961.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 2 | 4 | Remapped | NW_003871096.1 |
| NW_004070873.1 | Chr22|NW_004070873.1 | 4 | 4 | Remapped | NW_004070873.1 |
| NW_004070876.1 | Chr22|NW_004070876.1 | 1 | 1 | Remapped | NW_004070876.1 |
| NT_167212.1 | Chr22|NT_167212.1 | 5 | 6 | Remapped | NT_167212.1 |
| NT_167234.1 | Chr22|NT_167234.1 | 1 | 1 | Remapped | NT_167234.1 |
| NT_167235.1 | Chr22|NT_167235.1 | 6 | 8 | Remapped | NT_167235.1 |
| NW_003571064.2 | ChrX|NW_003571064.2 | 7 | 9 | Remapped | NW_003571064.2 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 15 | 20 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 5 | 10 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 6 | 8 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 6 | 7 | Remapped | NW_003871101.3 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 33 | 44 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 36 | 47 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 12 | 17 | Remapped | NW_004070878.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 7 | 11 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 25 | 31 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 8 | 10 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 12 | 17 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 6 | 8 | Remapped | NW_004070883.1 |
| NW_004070884.1 | ChrX|NW_004070884.1 | 4 | 5 | Remapped | NW_004070884.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 1 | 1 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 7 | 11 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 13 | 18 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 7 | 8 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 19 | 25 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 76 | 102 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 25 | 37 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 7 | 11 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 1 | 2 | Remapped | NW_004070893.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 4 | 6 | Remapped | NW_004166866.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| KI270728.1 | Chr16|KI270728.1 | 5 | 0 | 0 | 0 | 1 | 0 | 8 | 0 | 0 | 0 | 2 | 0 |
| KI270905.1 | Chr15|KI270905.1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 |
| NC_000001.11 | Chr1 | 4,344 | 4,236 | 0 | 0 | 16 | 92 | 6,078 | 5,931 | 0 | 0 | 20 | 127 |
| NC_000002.12 | Chr2 | 4,820 | 4,784 | 0 | 0 | 25 | 11 | 6,800 | 6,758 | 0 | 0 | 26 | 16 |
| NC_000003.12 | Chr3 | 4,110 | 4,041 | 0 | 0 | 53 | 16 | 5,840 | 5,755 | 0 | 0 | 66 | 19 |
| NC_000004.12 | Chr4 | 4,131 | 4,098 | 0 | 0 | 2 | 31 | 5,848 | 5,803 | 0 | 0 | 2 | 43 |
| NC_000005.10 | Chr5 | 3,719 | 3,678 | 0 | 0 | 29 | 12 | 5,219 | 5,171 | 0 | 0 | 29 | 19 |
| NC_000006.12 | Chr6 | 3,568 | 3,517 | 0 | 0 | 28 | 23 | 5,060 | 4,993 | 0 | 0 | 36 | 31 |
| NC_000007.14 | Chr7 | 3,200 | 3,107 | 0 | 0 | 22 | 71 | 4,530 | 4,412 | 0 | 0 | 25 | 93 |
| NC_000008.11 | Chr8 | 2,854 | 2,844 | 0 | 0 | 3 | 7 | 4,042 | 4,031 | 0 | 0 | 3 | 8 |
| NC_000009.12 | Chr9 | 2,361 | 2,342 | 0 | 0 | 13 | 6 | 3,310 | 3,284 | 0 | 0 | 17 | 9 |
| NC_000010.11 | Chr10 | 2,607 | 2,499 | 0 | 0 | 32 | 76 | 3,694 | 3,551 | 0 | 0 | 39 | 104 |
| NC_000011.10 | Chr11 | 2,688 | 2,633 | 0 | 0 | 2 | 53 | 3,840 | 3,760 | 0 | 0 | 2 | 78 |
| NC_000012.12 | Chr12 | 2,720 | 2,683 | 0 | 0 | 21 | 16 | 3,865 | 3,822 | 0 | 0 | 25 | 18 |
| NC_000013.11 | Chr13 | 2,107 | 2,080 | 0 | 0 | 25 | 2 | 2,999 | 2,968 | 0 | 0 | 27 | 4 |
| NC_000014.9 | Chr14 | 1,923 | 1,917 | 0 | 0 | 3 | 3 | 2,712 | 2,703 | 0 | 0 | 5 | 4 |
| NC_000015.10 | Chr15 | 1,596 | 1,581 | 0 | 0 | 14 | 1 | 2,252 | 2,234 | 0 | 0 | 16 | 2 |
| NC_000016.10 | Chr16 | 1,322 | 1,305 | 0 | 0 | 17 | 0 | 1,791 | 1,771 | 0 | 0 | 20 | 0 |
| NC_000017.11 | Chr17 | 1,505 | 1,469 | 0 | 0 | 5 | 31 | 2,079 | 2,031 | 0 | 0 | 5 | 43 |
| NC_000018.10 | Chr18 | 1,595 | 1,590 | 0 | 0 | 5 | 0 | 2,245 | 2,239 | 0 | 0 | 6 | 0 |
| NC_000019.10 | Chr19 | 969 | 940 | 0 | 0 | 1 | 28 | 1,301 | 1,259 | 0 | 0 | 2 | 40 |
| NC_000020.11 | Chr20 | 1,200 | 1,116 | 0 | 0 | 77 | 7 | 1,643 | 1,539 | 0 | 0 | 95 | 9 |
| NC_000021.9 | Chr21 | 790 | 761 | 0 | 0 | 22 | 7 | 1,109 | 1,071 | 0 | 0 | 30 | 8 |
| NC_000022.11 | Chr22 | 609 | 578 | 0 | 0 | 27 | 4 | 832 | 796 | 0 | 0 | 30 | 6 |
| NC_000023.11 | ChrX | 1,964 | 1,629 | 0 | 0 | 1 | 334 | 2,696 | 2,241 | 0 | 0 | 1 | 454 |
| NC_000024.10 | ChrY | 19 | 18 | 0 | 0 | 1 | 0 | 21 | 20 | 0 | 0 | 1 | 0 |
Samplesets
Number of Samplesets: 2
- Sampleset ID:
- 1
- Name:
- HC 1kGP 1
- Description:
- High Coverage 1000 Genomes
- Size:
- 2,504
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| SAMN00016971 | HG00179 | Female | FIN | Not reported |
| SAMN00016969 | HG00177 | Female | FIN | Not reported |
| SAMN00006344 | HG00126 | Male | GBR | Not reported |
| SAMN00004677 | HG00233 | Female | GBR | Not reported |
| SAMN00004646 | HG00128 | Female | GBR | Not reported |
| SAMN00006354 | HG00245 | Female | GBR | Not reported |
| SAMN00004657 | HG00139 | Male | GBR | Not reported |
| SAMN00016977 | HG00186 | Male | FIN | Not reported |
| SAMN00004642 | HG00116 | Male | GBR | Not reported |
| SAMN00004651 | HG00133 | Female | GBR | Not reported |
| SAMN00004629 | HG00103 | Male | GBR | Not reported |
| SAMN00004668 | HG00150 | Female | GBR | Not reported |
| SAMN00004628 | HG00102 | Female | GBR | Not reported |
| SAMN00004639 | HG00113 | Male | GBR | Not reported |
| SAMN00006358 | HG00253 | Female | GBR | Not reported |
| SAMN00006365 | HG00261 | Female | GBR | Not reported |
| SAMN00006343 | HG00125 | Female | GBR | Not reported |
| SAMN00004672 | HG00155 | Male | GBR | Not reported |
| SAMN00004633 | HG00107 | Male | GBR | Not reported |
| SAMN00004664 | HG00146 | Female | GBR | Not reported |
| SAMN00016968 | HG00176 | Female | FIN | Not reported |
| SAMN00006351 | HG00242 | Male | GBR | Not reported |
| SAMN00004643 | HG00117 | Male | GBR | Not reported |
| SAMN00004680 | HG00238 | Female | GBR | Not reported |
| SAMN00004667 | HG00149 | Male | GBR | Not reported |
| SAMN00004660 | HG00142 | Male | GBR | Not reported |
| SAMN00004647 | HG00129 | Male | GBR | Not reported |
| SAMN00004656 | HG00138 | Male | GBR | Not reported |
| SAMN00006341 | HG00123 | Female | GBR | Not reported |
| SAMN00004666 | HG00148 | Male | GBR | Not reported |
| SAMN00006353 | HG00244 | Male | GBR | Not reported |
| SAMN00016980 | HG00189 | Male | FIN | Not reported |
| SAMN00016973 | HG00181 | Male | FIN | Not reported |
| SAMN00004627 | HG00101 | Male | GBR | Not reported |
| SAMN00009091 | HG00250 | Female | GBR | Not reported |
| SAMN00004661 | HG00143 | Male | GBR | Not reported |
| SAMN00004676 | HG00160 | Male | GBR | Not reported |
| SAMN00006352 | HG00243 | Male | GBR | Not reported |
| SAMN00016965 | HG00171 | Female | FIN | Not reported |
| SAMN00004679 | HG00235 | Female | GBR | Not reported |
| SAMN00004682 | HG00255 | Female | GBR | Not reported |
| SAMN00004631 | HG00105 | Male | GBR | Not reported |
| SAMN00004655 | HG00137 | Female | GBR | Not reported |
| SAMN00004650 | HG00132 | Female | GBR | Not reported |
| SAMN00009092 | HG00251 | Male | GBR | Not reported |
| SAMN00006350 | HG00239 | Female | GBR | Not reported |
| SAMN00004635 | HG00109 | Male | GBR | Not reported |
| SAMN00006340 | HG00122 | Female | GBR | Not reported |
| SAMN00009088 | HG00154 | Female | GBR | Not reported |
| SAMN00006364 | HG00260 | Male | GBR | Not reported |
| SAMN00006338 | HG00119 | Male | GBR | Not reported |
| SAMN00016975 | HG00183 | Male | FIN | Not reported |
| SAMN00004634 | HG00108 | Male | GBR | Not reported |
| SAMN00016974 | HG00182 | Male | FIN | Not reported |
| SAMN00004681 | HG00240 | Female | GBR | Not reported |
| SAMN00006337 | HG00118 | Female | GBR | Not reported |
| SAMN00006357 | HG00252 | Male | GBR | Not reported |
| SAMN00016981 | HG00190 | Male | FIN | Not reported |
| SAMN00004674 | HG00157 | Male | GBR | Not reported |
| SAMN00016967 | HG00174 | Female | FIN | Not reported |
| SAMN00004654 | HG00136 | Male | GBR | Not reported |
| SAMN00004636 | HG00110 | Female | GBR | Not reported |
| SAMN00006359 | HG00254 | Female | GBR | Not reported |
| SAMN00016978 | HG00187 | Male | FIN | Not reported |
| SAMN00016979 | HG00188 | Male | FIN | Not reported |
| SAMN00004626 | HG00100 | Female | GBR | Not reported |
| SAMN00009089 | HG00246 | Male | GBR | Not reported |
| SAMN00004648 | HG00130 | Female | GBR | Not reported |
| SAMN00004638 | HG00112 | Male | GBR | Not reported |
| SAMN00004622 | HG00096 | Male | GBR | Not reported |
| SAMN00006339 | HG00121 | Female | GBR | Not reported |
| SAMN00004658 | HG00140 | Male | GBR | Not reported |
| SAMN00006360 | HG00256 | Male | GBR | Not reported |
| SAMN00004625 | HG00099 | Female | GBR | Not reported |
| SAMN00004637 | HG00111 | Female | GBR | Not reported |
| SAMN00004675 | HG00158 | Female | GBR | Not reported |
| SAMN00016976 | HG00185 | Male | FIN | Not reported |
| SAMN00006349 | HG00237 | Female | GBR | Not reported |
| SAMN00004641 | HG00115 | Male | GBR | Not reported |
| SAMN00004640 | HG00114 | Male | GBR | Not reported |
| SAMN00016972 | HG00180 | Female | FIN | Not reported |
| SAMN00004649 | HG00131 | Male | GBR | Not reported |
| SAMN00006362 | HG00258 | Female | GBR | Not reported |
| SAMN00004632 | HG00106 | Female | GBR | Not reported |
| SAMN00004678 | HG00234 | Male | GBR | Not reported |
| SAMN00006363 | HG00259 | Female | GBR | Not reported |
| SAMN00016966 | HG00173 | Female | FIN | Not reported |
| SAMN00004645 | HG00127 | Female | GBR | Not reported |
| SAMN00004644 | HG00120 | Female | GBR | Not reported |
| SAMN00004659 | HG00141 | Male | GBR | Not reported |
| SAMN00004669 | HG00151 | Male | GBR | Not reported |
| SAMN00004623 | HG00097 | Female | GBR | Not reported |
| SAMN00004663 | HG00145 | Male | GBR | Not reported |
| SAMN00006366 | HG00262 | Female | GBR | Not reported |
| SAMN00006345 | HG00159 | Male | GBR | Not reported |
| SAMN00006347 | HG00232 | Female | GBR | Not reported |
| SAMN00006361 | HG00257 | Female | GBR | Not reported |
| SAMN00006348 | HG00236 | Female | GBR | Not reported |
| SAMN00006346 | HG00231 | Female | GBR | Not reported |
| SAMN00016970 | HG00178 | Female | FIN | Not reported |
- Sampleset ID:
- 2
- Name:
- HC 1kGP 2
- Description:
- High Coverage 1000 Genomes
- Size:
- 698
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| HG01106 | HG01106 | Male | PUR | Not reported |
| HG01175 | HG01175 | Female | PUR | Not reported |
| HG00694 | HG00694 | Male | CHS | Not reported |
| HG00642 | HG00642 | Male | PUR | Not reported |
| HG00526 | HG00526 | Male | CHS | Not reported |
| HG00627 | HG00627 | Male | CHS | Not reported |
| SAMN00006532 | HG00635 | Female | CHS | Not reported |
| SAMN00006463 | HG00501 | Female | CHS | Not reported |
| HG01100 | HG01100 | Female | PUR | Not reported |
| HG00429 | HG00429 | Male | CHS | Not reported |
| HG01189 | HG01189 | Male | PUR | Not reported |
| HG01103 | HG01103 | Female | PUR | Not reported |
| HG00577 | HG00577 | Male | CHS | Not reported |
| HG00447 | HG00447 | Female | CHS | Not reported |
| HG00615 | HG00615 | Female | CHS | Not reported |
| HG01135 | HG01135 | Male | CLM | Not reported |
| HG00502 | HG00502 | Male | CHS | Not reported |
| HG00423 | HG00423 | Female | CHS | Not reported |
| HG01199 | HG01199 | Male | PUR | Not reported |
| HG01062 | HG01062 | Female | PUR | Not reported |
| HG00597 | HG00597 | Female | CHS | Not reported |
| HG01074 | HG01074 | Male | PUR | Not reported |
| HG01050 | HG01050 | Female | PUR | Not reported |
| HG01056 | HG01056 | Male | PUR | Not reported |
| HG00741 | HG00741 | Female | PUR | Not reported |
| SAMN00006581 | HG00733 | Female | PUR | Not reported |
| HG01138 | HG01138 | Male | CLM | Not reported |
| HG01068 | HG01068 | Female | PUR | Not reported |
| HG00658 | HG00658 | Male | CHS | Not reported |
| HG00609 | HG00609 | Male | CHS | Not reported |
| HG00735 | HG00735 | Female | PUR | Not reported |
| HG00655 | HG00655 | Female | CHS | Not reported |
| HG01169 | HG01169 | Female | PUR | Not reported |
| HG00700 | HG00700 | Female | CHS | Not reported |
| HG00561 | HG00561 | Female | CHS | Not reported |
| HG00652 | HG00652 | Female | CHS | Not reported |
| HG00438 | HG00438 | Female | CHS | Not reported |
| HG00544 | HG00544 | Female | CHS | Not reported |
| HG00673 | HG00673 | Male | CHS | Not reported |
| HG00532 | HG00532 | Male | CHS | Not reported |
| HG00480 | HG00480 | Male | CHS | Not reported |
| HG01150 | HG01150 | Female | CLM | Not reported |
| HG00477 | HG00477 | Male | CHS | Not reported |
| HG00709 | HG00709 | Male | CHS | Not reported |
| HG01249 | HG01249 | Female | PUR | Not reported |
| HG00555 | HG00555 | Female | PUR | Not reported |
| HG00552 | HG00552 | Male | PUR | Not reported |
| HG00450 | HG00450 | Female | CHS | Not reported |
| HG01081 | HG01081 | Female | PUR | Not reported |
| HG00514 | HG00514 | Female | CHS | Not reported |
| HG00664 | HG00664 | Male | CHS | Not reported |
| HG01114 | HG01114 | Female | CLM | Not reported |
| HG00579 | HG00579 | Female | CHS | Not reported |
| HG01109 | HG01109 | Male | PUR | Not reported |
| HG01087 | HG01087 | Female | PUR | Not reported |
| HG00621 | HG00621 | Male | CHS | Not reported |
| HG01243 | HG01243 | Male | PUR | Not reported |
| HG00512 | HG00512 | Male | CHS | Not reported |
| HG00465 | HG00465 | Male | CHS | Not reported |
| HG00585 | HG00585 | Female | CHS | Not reported |
| HG01071 | HG01071 | Female | PUR | Not reported |
| HG01206 | HG01206 | Male | PUR | Not reported |
| HG01053 | HG01053 | Female | PUR | Not reported |
| HG00538 | HG00538 | Male | CHS | Not reported |
| HG01141 | HG01141 | Female | CLM | Not reported |
| HG00591 | HG00591 | Male | CHS | Not reported |
| HG00691 | HG00691 | Male | CHS | Not reported |
| HG01184 | HG01184 | Female | PUR | Not reported |
| HG00418 | HG00418 | Male | CHS | Not reported |
| HG00405 | HG00405 | Female | CHS | Not reported |
| HG00567 | HG00567 | Male | CHS | Not reported |
| HG00474 | HG00474 | Male | CHS | Not reported |
| HG00685 | HG00685 | Male | CHS | Not reported |
| HG00639 | HG00639 | Female | PUR | Not reported |
| HG01126 | HG01126 | Male | CLM | Not reported |
| HG00636 | HG00636 | Male | CHS | Not reported |
| HG00582 | HG00582 | Female | CHS | Not reported |
| HG01178 | HG01178 | Male | PUR | Not reported |
| HG01252 | HG01252 | Male | CLM | Not reported |
| HG00558 | HG00558 | Female | CHS | Not reported |
| HG00612 | HG00612 | Female | CHS | Not reported |
| HG01192 | HG01192 | Male | PUR | Not reported |
| HG00594 | HG00594 | Male | CHS | Not reported |
| HG00420 | HG00420 | Male | CHS | Not reported |
| HG01172 | HG01172 | Male | PUR | Not reported |
| HG01099 | HG01099 | Male | PUR | Not reported |
| HG01084 | HG01084 | Female | PUR | Not reported |
| HG00444 | HG00444 | Male | CHS | Not reported |
| HG01096 | HG01096 | Male | PUR | Not reported |
| HG00738 | HG00738 | Male | PUR | Not reported |
| HG00703 | HG00703 | Male | CHS | Not reported |
| HG00535 | HG00535 | Male | CHS | Not reported |
| HG00630 | HG00630 | Male | CHS | Not reported |
| HG00459 | HG00459 | Male | CHS | Not reported |
| HG00453 | HG00453 | Female | CHS | Not reported |
| HG00706 | HG00706 | Male | CHS | Not reported |
| HG00578 | HG00578 | Female | CHS | Not reported |
| SAMN00006568 | HG00702 | Female | CHS | Not reported |
| HG00427 | HG00427 | Male | CHS | Not reported |
| HG00408 | HG00408 | Female | CHS | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | Other | 79,820 |