dbVar

dbVar is NCBI's database of human genomic Structural Variation — large variants >50 bp including insertions, deletions, duplications, inversions, mobile elements, translocations, and complex variants

Getting Started

Accessing Data

Other NCBI Resources

Announcing the dbVar Public Track Hub! dbVar has released a track hub containing curated datasets of Clinical SV and Common SV. You can view data summaries at the preceding links, and browse the new tracks using NCBI's Variation Viewer or by connecting to the Public dbVar Hub at the UCSC Genome Browser.

Our Clinical SV Walkthrough Page shows you how to visualize and explore known clinical structural variants, and more generally how to navigate our resource.

dbVar's Non-redundant (NR) SV files on GitHub allow you to compare your SV with known insertions, deletions, and duplications. Includes tutorials.

Search Examples (additional terms)

Gene	PTEN[Gene Name]
Genomic location	6[Chr] AND (1500000:3000000[ChrPos] OR 1500000:3000000[ChrEnd])
Gene in a specific dataset	CFTR[Gene Name] AND "1000 Genomes"[Study]
Clinical significance and phenotype	((Pathogenic[Clinical Interpretation]) OR "Likely pathogenic"[Clinical Interpretation]) AND autism[Clinical Phenotype]
All of dbVar (then use filters on results page)	all[sb]