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Organizing biological data

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Select item 11517031.

WGS of clinical Escherichia coli isolates from maternity wards of Russian hospitals

: Project data type: Genome sequencing

Scope:: Multispecies

Central Research Institute of Epidemiology

Accession:: PRJNA1151703
ID:: 1151703

Select item 11465842.

Homo sapiens strain:human SFTPC-GFP 201B7 iPSC reporter line (B2-3)

Generation of ACE2 knockout human iPSCs and their differentiation into airway and alveolar epithelial cells in air-liquid interface culture

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Monoisolate

Center for iPS Cell Research and Application

Accession:: PRJDB15620
ID:: 1146584

Select item 11433023.

RNAseq of leaf tissue of Medicago truncatula R108 WT and mtftb1/2 gene-edited double mutant at two different developmental stages and vernalised conditions

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB69307
ID:: 1143302

Select item 11275464.

Bacillus amyloliquefaciens strain:B2

Bacillus amyloliquefaciens strain:B2 Genome sequencing

Taxonomy:: Bacillus amyloliquefaciens

: Project data type: Genome sequencing

Scope:: Monoisolate

CAES

Accession:: PRJNA1127546
ID:: 1127546

Select item 11237175.

Set7: ERCC bulk short-read RNA-seq by Illumina NextSeq platform, additional samples

Taxonomy:: synthetic construct

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

University of Pittsburgh

Accession:: PRJNA1123717
ID:: 1123717

Select item 11139886.

In vivo interaction screening reveals liver-derived constraints to metastasis [Single Cell Multiome ATAC + Gene Expression]

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Other

Scope:: Multiisolate

ETH Zurich

Accession:: PRJNA1113988
ID:: 1113988

Select item 11139867.

In vivo interaction screening reveals liver-derived constraints to metastasis [scRNA-Seq]

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

ETH Zurich

Accession:: PRJNA1113986
ID:: 1113986

Select item 11120058.

Erythranthe nasuta cultivar:SF

Mimulus nasutus SF Transcriptome - SF_B2

Taxonomy:: Erythranthe nasuta

: Project data type: Transcriptome or Gene expression

Scope:: Monoisolate

DOE Joint Genome Institute

Accession:: PRJNA1112005
ID:: 1112005

Select item 11119929.

Erythranthe guttata cultivar:IM62

Mimulus guttatus IM62 Improved Transcriptome - IM62_B2

Organism:: Erythranthe guttata

Taxonomy:: Erythranthe guttata (spotted monkey flower)

: Project data type: Transcriptome or Gene expression

Scope:: Monoisolate

DOE Joint Genome Institute

Accession:: PRJNA1111992
ID:: 1111992

Select item 111019010.

GDF15 links beta-adrenergic induced lipolysis with anxiety

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Steinberg Lab, Medicine, McMaster University

Accession:: PRJNA1110190
ID:: 1110190

Select item 110539411.

Brassica rapa Transcriptome or Gene expression

Taxonomy:: Brassica rapa (field mustard)

: Project data type: Transcriptome or Gene expression

Scope:: Monoisolate

Qinghai University

Accession:: PRJNA1105394
ID:: 1105394

Select item 110500612.

Molecular characterization and differential expression profiles of transcription factor Sox gene family between ovaries and testes from golden pompano （Trachinotus ovatus）

Organism:: Trachinotus ovatus

Taxonomy:: Trachinotus ovatus (derbio)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Chinese Academy of Fishery Sciences

Accession:: PRJNA1105006
ID:: 1105006

Select item 110430513.

Netrin-1 engineered endothelial cell exosomes induce the formation of pre-regenerative niche to accelerate peripheral nerve repair [scRNA-seq]

Organism:: Rattus norvegicus

Taxonomy:: Rattus norvegicus (Norway rat)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Zhengzhou University

Accession:: PRJNA1104305
ID:: 1104305

Select item 109848014.

Biochar treatment of peanut rhizosphere nitrogen-fixing bacteria

: Project data type: Raw sequence reads

Scope:: Multispecies

Shandong Academy of Agricultural Sciences

Accession:: PRJNA1098480
ID:: 1098480

Select item 109254315.

ROS CALR and TLR3 B2m signaling balance eat me and do not eat me signals for HSC quality assurance by macrophages

: Project data type: Raw sequence reads

Scope:: Multispecies

Harvard

Accession:: PRJNA1092543
ID:: 1092543

Select item 108755916.

Pseudomonas bubulae strain:B2

Pseudomonas bubulae strain:B2 Genome sequencing and assembly

Taxonomy:: Pseudomonas bubulae

: Project data type: Genome sequencing and assembly

Scope:: Monoisolate

South China Agricultural University

Accession:: PRJNA1087559
ID:: 1087559

Select item 108135417.

Fibrosis-related transcriptome unveils a distinctive matrix remodeling pattern in penetrating but not in stricturing ileal Crohn's disease

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Expression Regulation in Cancer, ipatimup/i3s

Accession:: PRJNA1081354
ID:: 1081354

Select item 108025218.

Pinellia ternata

Pinellia ternata Raw sequence reads

Taxonomy:: Pinellia ternata

: Project data type: Raw sequence reads

Scope:: Multiisolate

Hubei University of Chinese Medicine

Accession:: PRJNA1080252
ID:: 1080252

Select item 107850319.

RNA-seq and Hi-C from HCT116 Lamin B1&B2 cells tagged with using the AID system

: Project data type: Raw sequence reads

Scope:: Multispecies

Northwestern University

Accession:: PRJNA1078503
ID:: 1078503

Select item 107831620.

Gene expression changes between naïve and IL-1β + TGF-β2 dual cytokine licensed equine mesenchymal stem cells

Organism:: Equus caballus

Taxonomy:: Equus caballus (horse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Clinical Sciences, North Carolina State University

Accession:: PRJNA1078316
ID:: 1078316

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