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Accession: PRJNA1078503 ID: 1078503

RNA-seq and Hi-C from HCT116 Lamin B1&B2 cells tagged with using the AID system

The goal is to assess how gene expression changes upon auxin-induced loss of lamins B1 and B2. More...
AccessionPRJNA1078503
Data TypeRaw sequence reads
ScopeMultispecies
Grants
  • "Welch Foundation" (Grant ID Q-1866, Welch Foundation)
  • "US-Israel Binational Science Foundation Award" (Grant ID 2019276, US-Israel Binational Science Foundation)
  • "EFRI CEE: Macrogenomic engineering via modulation of chromatin nanoenvironment" (Grant ID EFMA-1830961, National Science Foundation)
  • "EFRI CEE: Epigenomic Regulation Over Multiple Length Scales: Understanding Chromatin Modifications Through Label Free Imaging and Multi-Scale Modeling" (Grant ID EFMA-1830969, National Science Foundation)
  • "BII-Implementation: Behavioral Plasticity Research Institute (BPRI): Transforming the Study of Phenotypic Plasticity through Biological Integration" (Grant ID NSF DBI-2021795, National Science Foundation)
  • "Center for Theoretical Biological Physics" (Grant ID NSF PHY-2019745, National Science Foundation)
  • "NIH CEGS Award" (Grant ID RM1HG011016-01A1, National Human Genome Research Institute of the National Institutes of Health)
  • "Comprehensive linking of DNA Elements in high-priority ENCODE Biosamples to their promoter targets" (Grant ID UM1 HG009375, National Human Genome Research Institute)
  • "Molecular and cellular characterization of essential human genes." (Grant ID UM1 HG012649, National Human Genome Research Institute)
  • "Reducing Cancer Transcriptional Heterogeneity through Regulation of Chromatin Structure" (Grant ID R01 CA228272, National Cancer Institute)
  • "Mechanical determinants of organ-selective metastatic colonization, dormancy and outgrowth" (Grant ID U54 CA261694, National Cancer Institute)
  • "Northwestern University Center for Chromatin NanoImaging in Cancer (NU-CCNIC)" (Grant ID U54 CA268084, National Cancer Institute)
  • "JSPS KAKENHI" (Grant ID JP21H0419, Japan Society for the Promotion of Science)
SubmissionRegistration date: 20-Feb-2024
Northwestern University
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments47
Other datasets
BioSample52
SRA Data Details
ParameterValue
Data volume, Gbases1,234
Data volume, Tbytes0.51

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