ID 678941 - BioProject

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Accession: PRJEB41354 ID: 678941

EMG produced TPA metagenomics assembly of PRJEB28422 data set (The Salivary Microbiome in Health and Disease).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB28422, and was assembled with SPAdes v3. More...

Accession	PRJEB41354
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 17-Nov-2020 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	14417
WGS master	129
Publications
PubMed	1
PMC	1
Other datasets
BioSample	129
Assembly	129

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

129
129

Assembly	WGS	BioSample	Taxonomy
GCA_916050445.1	CAJZKY000000000	SAMEA9943307	Actinomyces bouchesdurhonensis
GCA_916050255.1	CAJZKK000000000	SAMEA9943393	Actinomyces graevenitzii
GCA_916050455.1	CAJZKW000000000	SAMEA9943388	Actinomyces graevenitzii
GCA_916050205.1	CAJZKH000000000	SAMEA9943420	Actinomyces oris
GCA_916048155.1	CAJZGY000000000	SAMEA9943385	Actinomyces oris
GCA_916048645.1	CAJZHV000000000	SAMEA9943318	Aggregatibacter aphrophilus
GCA_916048085.1	CAJZGM000000000	SAMEA9943384	Capnocytophaga leadbetteri
GCA_916050005.1	CAJZJL000000000	SAMEA9943336	Capnocytophaga sputigena
GCA_916050195.1	CAJZKE000000000	SAMEA9943410	Fusobacterium periodonticum
GCA_916050185.1	CAJZLO000000000	SAMEA9943381	Fusobacterium periodonticum
GCA_916050115.1	CAJZJT000000000	SAMEA9943415	Fusobacterium periodonticum
GCA_916050165.1	CAJZKC000000000	SAMEA9943392	Gemella sanguinis
GCA_916050245.1	CAJZKF000000000	SAMEA9943422	Haemophilus parainfluenzae
GCA_916050225.1	CAJZKJ000000000	SAMEA9943310	Haemophilus parainfluenzae
GCA_916050435.1	CAJZLA000000000	SAMEA9943367	Haemophilus parainfluenzae
GCA_916050345.1	CAJZKN000000000	SAMEA9943425	Haemophilus parainfluenzae
GCA_916048305.1	CAJZHE000000000	SAMEA9943335	Haemophilus parainfluenzae
GCA_916050685.1	CAJZLS000000000	SAMEA9943427	Haemophilus parainfluenzae
GCA_916048365.1	CAJZHJ000000000	SAMEA9943331	Hoylesella nanceiensis
GCA_916049615.1	CAJZIN000000000	SAMEA9943411	Kytococcus sedentarius
GCA_916050015.1	CAJZJZ000000000	SAMEA9943350	Lactobacillus gasseri
GCA_916049875.1	CAJZJA000000000	SAMEA9943368	Lautropia mirabilis
GCA_916050215.1	CAJZKD000000000	SAMEA9943401	Megasphaera micronuciformis
GCA_916048045.1	CAJZGH000000000	SAMEA9943379	Megasphaera micronuciformis
GCA_916049675.1	CAJZIF000000000	SAMEA9943400	Mogibacterium diversum
GCA_916049585.1	CAJZIC000000000	SAMEA9943319	Neisseria flavescens
GCA_916049695.1	CAJZIH000000000	SAMEA9943361	Neisseria flavescens
GCA_916048335.1	CAJZHR000000000	SAMEA9943398	Neisseria flavescens
GCA_916048815.1	CAJZHX000000000	SAMEA9943325	Neisseria flavescens
GCA_916050295.1	CAJZKM000000000	SAMEA9943341	Neisseria flavescens
GCA_916050365.1	CAJZKQ000000000	SAMEA9943416	Neisseria flavescens
GCA_916049965.1	CAJZJE000000000	SAMEA9943302	Neisseria flavescens
GCA_916050025.1	CAJZJM000000000	SAMEA9943405	Neisseria flavescens
GCA_916049775.1	CAJZIT000000000	SAMEA9943330	Neisseria flavescens
GCA_916050325.1	CAJZKP000000000	SAMEA9943299	Peptostreptococcus stomatis
GCA_916050465.1	CAJZKZ000000000	SAMEA9943355	Porphyromonas gingivalis
GCA_916050375.1	CAJZKT000000000	SAMEA9943421	Prevotella dentalis
GCA_916050285.1	CAJZLJ000000000	SAMEA9943365	Prevotella histicola
GCA_916050235.1	CAJZKL000000000	SAMEA9943345	Prevotella jejuni
GCA_916050355.1	CAJZKR000000000	SAMEA9943363	Prevotella melaninogenica
GCA_916050405.1	CAJZKV000000000	SAMEA9943312	Prevotella melaninogenica
GCA_916049795.1	CAJZIW000000000	SAMEA9943424	Prevotella melaninogenica
GCA_916050065.1	CAJZJU000000000	SAMEA9943357	Prevotella melaninogenica
GCA_916048225.1	CAJZGV000000000	SAMEA9943391	Prevotella melaninogenica
GCA_916050515.1	CAJZLG000000000	SAMEA9943334	Prevotella melaninogenica
GCA_916050485.1	CAJZLE000000000	SAMEA9943306	Prevotella melaninogenica
GCA_916049995.1	CAJZJJ000000000	SAMEA9943323	Prevotella nigrescens
GCA_916049825.1	CAJZIY000000000	SAMEA9943344	Prevotella pallens
GCA_916048135.1	CAJZGP000000000	SAMEA9943301	Prevotella pallens
GCA_916050475.1	CAJZLD000000000	SAMEA9943337	Prevotella pallens
GCA_916048175.1	CAJZGU000000000	SAMEA9943423	Rothia mucilaginosa
GCA_916049745.1	CAJZIR000000000	SAMEA9943320	Rothia mucilaginosa
GCA_916050265.1	CAJZKG000000000	SAMEA9943338	Rothia mucilaginosa
GCA_916049885.1	CAJZJD000000000	SAMEA9943314	Schaalia odontolytica
GCA_916048655.1	CAJZHW000000000	SAMEA9943362	Segatella salivae
GCA_916047955.1	CAJZGI000000000	SAMEA9943409	Stomatobaculum longum
GCA_916050075.1	CAJZJV000000000	SAMEA9943369	Stomatobaculum longum
GCA_916050595.1	CAJZLM000000000	SAMEA9943339	Streptococcus mitis
GCA_916050125.1	CAJZJS000000000	SAMEA9943407	Streptococcus mitis
GCA_916048205.1	CAJZGR000000000	SAMEA9943305	Streptococcus mitis
GCA_916049785.1	CAJZIS000000000	SAMEA9943300	Streptococcus salivarius
GCA_916049655.1	CAJZIG000000000	SAMEA9943374	Streptococcus sanguinis
GCA_916048375.1	CAJZHK000000000	SAMEA9943372	Veillonella atypica
GCA_916048275.1	CAJZHA000000000	SAMEA9943352	Veillonella atypica
GCA_916049855.1	CAJZJB000000000	SAMEA9943402	Veillonella atypica
GCA_916050145.1	CAJZJX000000000	SAMEA9943396	Veillonella atypica
GCA_916049955.1	CAJZJK000000000	SAMEA9943343	Veillonella parvula
GCA_916049945.1	CAJZJF000000000	SAMEA9943351	[Eubacterium] sulci
GCA_916048345.1	CAJZHI000000000	SAMEA9943403	uncultured Abiotrophia sp.
GCA_916048355.1	CAJZHS000000000	SAMEA9943397	uncultured Actinomyces sp.
GCA_916048505.1	CAJZHP000000000	SAMEA9943354	uncultured Actinomyces sp.
GCA_916048845.1	CAJZHY000000000	SAMEA9943353	uncultured Actinomyces sp.
GCA_916048265.1	CAJZHB000000000	SAMEA9943356	uncultured Actinomyces sp.
GCA_916048295.1	CAJZHG000000000	SAMEA9943324	uncultured Actinomyces sp.
GCA_916047915.1	CAJZGN000000000	SAMEA9943309	uncultured Actinomyces sp.
GCA_916049915.1	CAJZJW000000000	SAMEA9943340	uncultured Actinomyces sp.
GCA_916050305.1	CAJZKI000000000	SAMEA9943349	uncultured Actinomyces sp.
GCA_916049835.1	CAJZIV000000000	SAMEA9943304	uncultured Actinomyces sp.
GCA_916050385.1	CAJZKU000000000	SAMEA9943419	uncultured Actinomyces sp.
GCA_916050525.1	CAJZLH000000000	SAMEA9943395	uncultured Actinomyces sp.
GCA_916050275.1	CAJZLK000000000	SAMEA9943308	uncultured Actinomycetaceae bacterium
GCA_916047965.1	CAJZGJ000000000	SAMEA9943359	uncultured Atopobium sp.
GCA_916048235.1	CAJZGX000000000	SAMEA9943406	uncultured Atopobium sp.
GCA_916048255.1	CAJZGW000000000	SAMEA9943358	uncultured Atopobium sp.
GCA_916050095.1	CAJZJP000000000	SAMEA9943333	uncultured Atopobium sp.
GCA_916049975.1	CAJZJG000000000	SAMEA9943426	uncultured Atopobium sp.
GCA_916049555.1	CAJZIB000000000	SAMEA9943303	uncultured Candidatus Saccharibacteria bacterium
GCA_916047985.1	CAJZGG000000000	SAMEA9943376	uncultured Candidatus Saccharibacteria bacterium
GCA_916049735.1	CAJZIQ000000000	SAMEA9943380	uncultured Gemella sp.
GCA_916049645.1	CAJZIK000000000	SAMEA9943370	uncultured Granulicatella sp.
GCA_916047925.1	CAJZGF000000000	SAMEA9943327	uncultured Lactobacillus sp.
GCA_916048195.1	CAJZGZ000000000	SAMEA9943389	uncultured Lactobacillus sp.
GCA_916049815.1	CAJZIU000000000	SAMEA9943382	uncultured Lactobacillus sp.
GCA_916049715.1	CAJZII000000000	SAMEA9943378	uncultured Neisseria sp.
GCA_916049635.1	CAJZIL000000000	SAMEA9943360	uncultured Parvimonas sp.
GCA_916048245.1	CAJZGS000000000	SAMEA9943326	uncultured Porphyromonas sp.
GCA_916048385.1	CAJZHH000000000	SAMEA9943315	uncultured Porphyromonas sp.
GCA_916049895.1	CAJZJC000000000	SAMEA9943383	uncultured Porphyromonas sp.
GCA_916049605.1	CAJZID000000000	SAMEA9943390	uncultured Prevotella sp.
GCA_916048635.1	CAJZHZ000000000	SAMEA9943386	uncultured Prevotellaceae bacterium
GCA_916048185.1	CAJZGO000000000	SAMEA9943408	uncultured Prevotellaceae bacterium
GCA_916047935.1	CAJZGE000000000	SAMEA9943316	uncultured Prevotellaceae bacterium
GCA_916049725.1	CAJZIP000000000	SAMEA9943417	uncultured Prevotellaceae bacterium
GCA_916050035.1	CAJZJN000000000	SAMEA9943317	uncultured Prevotellaceae bacterium
GCA_916050425.1	CAJZKX000000000	SAMEA9943375	uncultured Prevotellaceae bacterium
GCA_916049845.1	CAJZIZ000000000	SAMEA9943377	uncultured Rothia sp.
GCA_916050395.1	CAJZKS000000000	SAMEA9943342	uncultured Rothia sp.
GCA_916050335.1	CAJZKO000000000	SAMEA9943346	uncultured Rothia sp.
GCA_916047905.1	CAJZGL000000000	SAMEA9943329	uncultured Rothia sp.
GCA_916048035.1	CAJZGK000000000	SAMEA9943399	uncultured Rothia sp.
GCA_916048395.1	CAJZHT000000000	SAMEA9943311	uncultured Rothia sp.
GCA_916049685.1	CAJZIM000000000	SAMEA9943373	uncultured Rothia sp.
GCA_916049705.1	CAJZIO000000000	SAMEA9943364	uncultured Rothia sp.
GCA_916049665.1	CAJZIE000000000	SAMEA9943418	uncultured Rothia sp.
GCA_916050085.1	CAJZJR000000000	SAMEA9943313	uncultured Solobacterium sp.
GCA_916049625.1	CAJZIJ000000000	SAMEA9943328	uncultured Stomatobaculum sp.
GCA_916048325.1	CAJZHF000000000	SAMEA9943322	uncultured Stomatobaculum sp.
GCA_916048145.1	CAJZGT000000000	SAMEA9943371	uncultured Streptococcus sp.
GCA_916048115.1	CAJZGQ000000000	SAMEA9943366	uncultured Streptococcus sp.
GCA_916050055.1	CAJZJY000000000	SAMEA9943321	uncultured Streptococcus sp.
GCA_916049935.1	CAJZJI000000000	SAMEA9943394	uncultured Streptococcus sp.
GCA_916049985.1	CAJZJH000000000	SAMEA9943404	uncultured Streptococcus sp.
GCA_916050415.1	CAJZLC000000000	SAMEA9943347	uncultured Treponema sp.
GCA_916050105.1	CAJZJQ000000000	SAMEA9943412	uncultured Veillonella sp.
GCA_916050045.1	CAJZJO000000000	SAMEA9943414	uncultured Veillonella sp.
GCA_916050175.1	CAJZKB000000000	SAMEA9943413	uncultured Xylanimonas sp.
GCA_916049765.1	CAJZIX000000000	SAMEA9943348	uncultured bacterium
GCA_916048315.1	CAJZHD000000000	SAMEA9943332	uncultured bacterium
GCA_916050495.1	CAJZLF000000000	SAMEA9943387	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJEB28422 data set (The Salivary Microbiome in Health and Disease).

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