Metagenome-assembled genome: ERR2764931_bin.4_meta... - BioSample

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Metagenome-assembled genome: ERR2764931_bin.4_metaWRAP_v1.1_MAG

Identifiers: BioSample: SAMEA9943420; SRA: ERS7621743

Organism: Actinomyces oris
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces

Attributes

collection date	2004-01-01
broad-scale environmental context	Human oral metagenome
local-scale environmental context	Human oral cavity
environmental medium	Saliva
geographic location	France
investigation type	metagenome-assembled genome
isolation source	human oral metagenome
project name	Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples).
sample name	ERR2764931_bin.4_metaWRAP_v1.1_MAG
ENA first public	2021-09-13
ENA last update	2021-09-13
ENA-CHECKLIST	ERC000047
External Id	SAMEA9943420
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-13T16:28:56Z
INSDC last update	2021-09-13T16:28:56Z
INSDC status	public
Submitter Id	ERR2764931_bin.4_metaWRAP_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.73
completeness software	CheckM
contamination score	0.57
geographic location (latitude)	48.79
geographic location (longitude)	2.4556
metagenomic source	human oral metagenome
sample derived from	SAMEA4873331
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764931 of study ERP110622.