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Metagenome-assembled genome: ERR2764928_bin.5_metaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA9943423; SRA: ERS7621746
Organism
Rothia mucilaginosa
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia
Attributes
collection date2004-01-01
broad-scale environmental contextHuman oral metagenome
local-scale environmental contextHuman oral cavity
environmental mediumSaliva
geographic locationFrance
investigation typemetagenome-assembled genome
isolation sourcehuman oral metagenome
project nameSeveral diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples).
sample nameERR2764928_bin.5_metaWRAP_v1.1_MAG
ENA first public2021-09-13
ENA last update2021-09-13
ENA-CHECKLISTERC000047
External IdSAMEA9943423
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-09-13T16:28:56Z
INSDC last update2021-09-13T16:28:56Z
INSDC statuspublic
Submitter IdERR2764928_bin.5_metaWRAP_v1.1_MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwaremetaSPAdes v3.14.1
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.67
completeness softwareCheckM
contamination score0.39
geographic location (latitude)48.79
geographic location (longitude)2.4556
metagenomic sourcehuman oral metagenome
sample derived fromSAMEA4873331
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764928 of study ERP110622.

BioProject
PRJEB41354
Retrieve all samples from this project

Submission
EBI; 2021-09-25
Accession:
SAMEA9943423
ID:
21820987

BioProject Nucleotide

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