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Metagenome-assembled genome: ERR2764840_bin.7_metaWRAP_v1.1_MAG

Identifiers
BioSample: SAMEA9943319; SRA: ERS7621642
Organism
Neisseria flavescens
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria
Attributes
collection date2011-01-01
broad-scale environmental contextHuman oral metagenome
local-scale environmental contextHuman oral cavity
environmental mediumSaliva
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourcehuman oral metagenome
project nameSeveral diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples).
sample nameERR2764840_bin.7_metaWRAP_v1.1_MAG
ENA first public2021-09-13
ENA last update2021-09-13
ENA-CHECKLISTERC000047
External IdSAMEA9943319
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-09-13T16:28:56Z
INSDC last update2021-09-13T16:28:56Z
INSDC statuspublic
Submitter IdERR2764840_bin.7_metaWRAP_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.14.1
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score59.48
completeness softwareCheckM
contamination score0.0
geographic location (latitude)49.3988
geographic location (longitude)8.6724
metagenomic sourcehuman oral metagenome
sample derived fromSAMEA4873308
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764840 of study ERP110622.

BioProject
PRJEB41354
Retrieve all samples from this project

Submission
EBI; 2021-09-25
Accession:
SAMEA9943319
ID:
21820883

BioProject Nucleotide

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