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    LOC6634680 probable ATP-dependent RNA helicase DHX34 [ Drosophila virilis ]

    Gene ID: 6634680, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6634680
    Gene description
    probable ATP-dependent RNA helicase DHX34
    Locus tag
    Dvir_GJ15737
    See related
    EnsemblRapid:LOC6634680
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila virilis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
    Also known as
    GJ15737; GJ15737-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6634680 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587403.1 (3650094..3654644)

    NW_022587403.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 16, NatA auxiliary subunit Neighboring gene mitochondrial ribosomal protein S14 Neighboring gene 5'-3' exoribonuclease pacman Neighboring gene protein SWAP Neighboring gene NADH:ubiquinone oxidoreductase subunit 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022587403 Unplaced Scaffold Reference DvirRS2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DHX34
    Names
    Dvir\GJ15737
    Dvir\GJ15737-PA
    dvir_GLEANR_16179

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DvirRS2

    Genomic

    1. NW_022587403.1 Reference DvirRS2

      Range
      3650094..3654644
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002057960.3 → XP_002057996.1  probable ATP-dependent RNA helicase DHX34

      See identical proteins and their annotated locations for XP_002057996.1

      UniProtKB/TrEMBL
      B4MA45
      Related
      XP_002057996.1, XM_002057960.3
      Conserved Domains (5) summary
      smart00487
      Location:131 → 326
      DEXDc; DEAD-like helicases superfamily
      smart00847
      Location:562 → 642
      HA2; Helicase associated domain (HA2) Add an annotation
      cd00046
      Location:162 → 297
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:360 → 492
      Helicase_C; Helicase conserved C-terminal domain
      pfam07717
      Location:793 → 896
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    Nucleotide Protein Strain
    Heading Accession and Version

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