1D9X,1A1V,1C4O,1CU1,1D2M,1D9Z,1FUU,1GM5,1HV8,1QDE


Conserved Protein Domain Family
DEXDc

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cd00046: DEXDc (this model, PSSM-Id:238005 is obsolete and has been replaced by 350668)
Click on image for an interactive view with Cn3D
DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 238005
Aligned: 228 rows
Threshold Bit Score: 35.3908
Created: 1-Nov-2000
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingputative Mg++
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #####                                                                  
1D9X_A      33 KHQTLLGATGTGKTFTISNVIAqvn----------kpTLVIAHNKTLAGQLYSELKEFfp---hnAVEYFVSYydyyqpe 99   Bacillus caldotenax
1D9Z_A      33 KHQTLLGATGTGKTFTISNVIAqvn----------kpTLVIAHNKTLAGQLYSELKEFfp---hnAVEYFVSYydyyqpe 99   Bacillus caldotenax
136806      75 CVTVVRAPMGSGKTTALIRWLReaihs------pdtsVLVVSCRRSFTQTLATRFAESgl---vdFVTYFSSTnyimn-- 143  Herpes simplex v...
136808      61 PVTVVRAPMGSGKTTALLEWLQhalk-------adisVLVVSCRRSFTQTLIQRFNDAgl---sgFVTYLTSEtyim--- 127  Human herpesviru...
465751     253 LVTVVCGETGSGKTTQIPQFLYeagya-----segelIGITEPRRVAAIAMAQRVGVElak--pdEVSYQIRYegtr--- 322  Caenorhabditis e...
1172616    113 RVIVVVGETGSGKSTQIPQFLNecpya------qegcVAITQPRRVAAVNLAKRVAAEqgcrlgeQVGYSIRFddtt--- 183  fission yeast
1709431     46 PIKLVRAAMGSGKTTALIHFLKqvpr--------elsVLLISCRKTFAAEILHRFTLNgl---kdFELYCDITerqi--- 111  Human herpesvirus 6
1709434     77 RVTVVRAPMGSGKTTALLRWLGealga------tdasVLVVSCRRSFTRTLHERLRDAal---paFATYFDARsyvmt-- 145  Bovine herpesvir...
2500542    408 DVVIICGETGSGKTTQVPQFLYeagfgaedspdypgmVGITQPRRVAAVSMAERVANElgd-hghKVGYQIRFdsta--- 483  baker's yeast
3183525    100 QVIVVAGETGSGKTTQLPKMCLelgfg------nlgmIGHTQPRRIAARSVAARIAEEletelggLVGYKVRFndqi--- 170  Haemophilus infl...
Feature 1                                                                                      
1D9X_A     100 ayvpqtdtyiekdakindeidklrhsatsalferrdVIIVASVS-CIYglgspeeyrelvvslrvgmeiernallrrlvd 178  Bacillus caldotenax
1D9Z_A     100 ayvpqtdtyiekdakindeidklrhsatsalferrdVIIVASVS-CIYglgspeeyrelvvslrvgmeiernallrrlvd 178  Bacillus caldotenax
136806     144 -------------------------------drpfhRLIVQVES-LHRvgpnl--------------------------- 164  Herpes simplex v...
136808     128 ---------------------------------gfkRLIVQLES-LHRvssea--------------------------- 146  Human herpesviru...
465751     323 --------------------------------settNILFMTDGvLMKemeqdv-------------------------- 344  Caenorhabditis e...
1172616    184 --------------------------------skktRIKYLTDGmLLRelindp-------------------------- 205  fission yeast
1709431    112 ---------------------------------nnrKVIVQIES-LHRlte----------------------------- 128  Human herpesvirus 6
1709434    146 -------------------------------gaayrRLLVQVES-LHRvdeel--------------------------- 166  Bovine herpesvir...
2500542    484 --------------------------------kedtKVKFMTDGvLLRemmhdf-------------------------- 505  baker's yeast
3183525    171 --------------------------------sdntQIKLMTDGiLLAeiqndr-------------------------- 192  Haemophilus infl...
Feature 1                                                                                      
1D9X_A     179 iqydrndidfrgtfrvrgdvveifpasrdehcirveffgdeieriraevdaltgkvlgerehvaifpashfvtreekmrl 258  Bacillus caldotenax
1D9Z_A     179 iqydrndidfrgtfrvrgdvveifpasrdehcirveffgdeierirevdaltgkvlgereh-vaifpashfvtreekmrl 257  Bacillus caldotenax
136806         --------------------------------------------------------------------------------      Herpes simplex v...
136808         --------------------------------------------------------------------------------      Human herpesviru...
465751         --------------------------------------------------------------------------------      Caenorhabditis e...
1172616        --------------------------------------------------------------------------------      fission yeast
1709431        --------------------------------------------------------------------------------      Human herpesvirus 6
1709434        --------------------------------------------------------------------------------      Bovine herpesvir...
2500542        --------------------------------------------------------------------------------      baker's yeast
3183525        --------------------------------------------------------------------------------      Haemophilus infl...
Feature 1                                                                                      
1D9X_A     259 aiqnieqeleerlaelraqgklleaqrleqrtrydlemmremgfcsgienysrhlalrppgstpytlldyfpddFLIIVD 338  Bacillus caldotenax
1D9Z_A     258 aiqnieqeleerlaelraqgklleaqrleqrtrydlemmremgfcsgienysrhlalrppgstpytlldyfpddFLIIVD 337  Bacillus caldotenax
136806     165 ----------------------------------------------------------------------lnnyDVLVLD 174  Herpes simplex v...
136808     147 ----------------------------------------------------------------------idsyDVLILD 156  Human herpesviru...
465751     345 ---------------------------------------------------------------------mlkkySVILID 355  Caenorhabditis e...
1172616    206 ---------------------------------------------------------------------ilsqyHTLILD 216  fission yeast
1709431    129 ------------------------------------------------------------------------nyDVLILD 136  Human herpesvirus 6
1709434    167 ----------------------------------------------------------------------lgdyDILVLD 176  Bovine herpesvir...
2500542    506 ---------------------------------------------------------------------kltkySSIIID 516  baker's yeast
3183525    193 ---------------------------------------------------------------------flnqySCLIID 203  Haemophilus infl...
Feature 1                                                                
1D9X_A     339 ESHVtlpqlrgmyngdrarkqvlvdhgfrlpsaldnrpltfeefeqkiNQIIYVSATP 396  Bacillus caldotenax
1D9Z_A     338 ESHVtlpqlrgmyngdrarkqvlvdhgfrlpsaldnrpltfeefeqkiNQIIYVSATP 395  Bacillus caldotenax
136806     175 EVMStlgqlysptmqqlg-----------------rvdalmlrllricPRIIAMDATA 215  Herpes simplex virus (type 1 / strain 17)
136808     157 EVMSvigqlysptmrrls-----------------avdsllyrllnrcSQIIAMDATV 197  Human herpesvirus 3 (strain Dumas)
465751     356 EAHErsmysdvligmls-------------------rivplrsktarpLRLVIMSATL 394  Caenorhabditis elegans
1172616    217 EAHErtlmtdmllgf-----------------------vkkiikkrpaLRVIIMSATL 251  fission yeast
1709431    137 EIMSiikqfysktmtktk-----------------evdckflsliknsSHVIAMDATL 177  Human herpesvirus 6
1709434    177 EVMStlaqlysptmgrlh-----------------rvdallhrllrrcPRIVAMDATV 217  Bovine herpesvirus type 1.1 (strain Co...
2500542    517 EAHErnintdiligmlsrcv------------rlraklhkenpiehkkLKLIIMSATL 562  baker's yeast
3183525    204 EAHErslnndfilgy----------------------lkqllprrrrdLKLIITSATI 239  Haemophilus influenzae

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