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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 07, 2012 |
| Title |
UW_ChipSeq_H7-hESC_H3K36me3_diffProtA_14d |
| Sample type |
SRA |
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| Source name |
H7-hESC
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| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: H7-hESC
cell organism: human
cell description: undifferentiated embryonic stem cells
cell lineage: inner cell mass
cell sex: U
antibody: H3K36me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription: Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname: Abcam
antibody vendorid: ab9050
treatment: diffProtA_14d
treatment description: H7 embryoid bodies differentiation protocol for cardiomyocyte, endothelial, smooth muscle, with markers cardiac troponin T (cTnT), CD31/PECAM1, smooth muscle alpha actin (SMA), respectively, using proteins from bone morphogenic protein 4 (BMP4), activin A and basic fibroblast growth factor (bFGF) for 14 days, cell sorting and specific growth factors were used, lineage: mesoderm
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH002532
labexpid: DS14123
labversion: Bowtie 0.12.7
replicate: 1
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| Biomaterial provider |
WiCell
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| Treatment protocol |
diffProtA_14d
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
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| Submission date |
Jun 07, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE35583 |
Histone Modifications by ChIP-seq from ENCODE/University of Washington |
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| Relations |
| SRA |
SRX190107 |
| BioSample |
SAMN01731586 |
| Named Annotation |
GSM945324_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa14dRawRep1.bigWig |
| Named Annotation |
GSM945324_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa14dRawRep2.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM945324_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa14dHotspotsRep1.broadPeak.gz |
5.2 Mb |
(ftp)(http) |
BROADPEAK |
| GSM945324_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa14dHotspotsRep2.broadPeak.gz |
5.8 Mb |
(ftp)(http) |
BROADPEAK |
| GSM945324_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa14dPkRep1.narrowPeak.gz |
1.0 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM945324_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa14dPkRep2.narrowPeak.gz |
1.2 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM945324_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa14dRawRep1.bigWig |
109.1 Mb |
(ftp)(http) |
BIGWIG |
| GSM945324_hg19_wgEncodeUwHistoneH7esH3k36me3StdDiffa14dRawRep2.bigWig |
166.4 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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