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Sample GSM94299 Query DataSets for GSM94299
Status Public on Mar 16, 2006
Title TMD sample from patient with Down Syndrome_DSTMD058
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Transient myeloproliferative disease, Down Syndrome
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 178.5 P 0.001248
AFFX-BioB-M_at 520 P 1.27E-04
AFFX-BioB-3_at 182.4 P 3.40E-04
AFFX-BioC-5_at 650.8 P 7.00E-05
AFFX-BioC-3_at 484.3 P 1.27E-04
AFFX-BioDn-5_at 478.3 P 8.10E-05
AFFX-BioDn-3_at 3544.8 P 7.00E-05
AFFX-CreX-5_at 7099.6 P 4.40E-05
AFFX-CreX-3_at 10884.4 P 4.40E-05
AFFX-DapX-5_at 9.8 A 0.313723
AFFX-DapX-M_at 15.1 A 0.216524
AFFX-DapX-3_at 4.7 A 0.794268
AFFX-LysX-5_at 8.6 A 0.287743
AFFX-LysX-M_at 19.4 A 0.559354
AFFX-LysX-3_at 2.4 A 0.544587
AFFX-PheX-5_at 1.7 A 0.910522
AFFX-PheX-M_at 11 A 0.659339
AFFX-PheX-3_at 22 A 0.425962
AFFX-ThrX-5_at 6.9 A 0.52976
AFFX-ThrX-M_at 4 A 0.760937

Total number of rows: 22283

Table truncated, full table size 585 Kbytes.

Supplementary data files not provided

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