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Sample GSM94275 Query DataSets for GSM94275
Status Public on Mar 16, 2006
Title AMKL sample, Down-Syndrome_DSAMKL018
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL sample from patient with Down Syndrome
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 162.2 P 0.002275
AFFX-BioB-M_at 226.5 P 9.50E-05
AFFX-BioB-3_at 154.7 P 1.69E-04
AFFX-BioC-5_at 539.9 P 8.10E-05
AFFX-BioC-3_at 376.1 P 8.10E-05
AFFX-BioDn-5_at 402.9 P 5.20E-05
AFFX-BioDn-3_at 2498.9 P 6.00E-05
AFFX-CreX-5_at 5034.2 P 4.40E-05
AFFX-CreX-3_at 7177.8 P 4.40E-05
AFFX-DapX-5_at 8.5 A 0.262827
AFFX-DapX-M_at 23.5 A 0.147939
AFFX-DapX-3_at 2.9 A 0.897835
AFFX-LysX-5_at 1.3 A 0.814869
AFFX-LysX-M_at 13 A 0.617401
AFFX-LysX-3_at 10.8 A 0.239063
AFFX-PheX-5_at 1.1 A 0.953518
AFFX-PheX-M_at 3.2 A 0.794268
AFFX-PheX-3_at 12.5 A 0.672921
AFFX-ThrX-5_at 9 A 0.749204
AFFX-ThrX-M_at 9.8 A 0.470241

Total number of rows: 22283

Table truncated, full table size 581 Kbytes.

Supplementary data files not provided

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