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| Status |
Public on Mar 16, 2006 |
| Title |
AMKL sample, Down-Syndrome_DSAMKL018 |
| Sample type |
RNA |
| |
|
| Source name |
bone marrow or peripheral blood
|
| Organism |
Homo sapiens |
| Characteristics |
diagnostic sample
|
| Extracted molecule |
total RNA |
| Extraction protocol |
mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
|
| Label |
biotin
|
| Label protocol |
2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
|
| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
standard Affymetrix procedures
|
| Description |
AMKL sample from patient with Down Syndrome
|
| Data processing |
Affymetrix Microarray Suite version 5.0
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| |
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| Submission date |
Jan 30, 2006 |
| Last update date |
Mar 16, 2006 |
| Contact name |
Jean-Pierre Bourquin |
| E-mail(s) |
jean-pierre.bourquin@kispi.unizh.ch
|
| Phone |
+41 44 266 7304
|
| Fax |
+41 44 266 7171
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| Organization name |
University Children's Hospital Zurich
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| Department |
Pediatric Oncology
|
| Lab |
Molecular Oncology
|
| Street address |
Steinwiesstrasse 75
|
| City |
Zurich |
| ZIP/Postal code |
8032 |
| Country |
Switzerland |
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|
| Platform ID |
GPL96 |
| Series (1) |
| GSE4119 |
Expression profiling of acute megakaryoblastic leukemia |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
MAS5-calculated Signal intensity |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
162.2 |
P |
0.002275 |
| AFFX-BioB-M_at |
226.5 |
P |
9.50E-05 |
| AFFX-BioB-3_at |
154.7 |
P |
1.69E-04 |
| AFFX-BioC-5_at |
539.9 |
P |
8.10E-05 |
| AFFX-BioC-3_at |
376.1 |
P |
8.10E-05 |
| AFFX-BioDn-5_at |
402.9 |
P |
5.20E-05 |
| AFFX-BioDn-3_at |
2498.9 |
P |
6.00E-05 |
| AFFX-CreX-5_at |
5034.2 |
P |
4.40E-05 |
| AFFX-CreX-3_at |
7177.8 |
P |
4.40E-05 |
| AFFX-DapX-5_at |
8.5 |
A |
0.262827 |
| AFFX-DapX-M_at |
23.5 |
A |
0.147939 |
| AFFX-DapX-3_at |
2.9 |
A |
0.897835 |
| AFFX-LysX-5_at |
1.3 |
A |
0.814869 |
| AFFX-LysX-M_at |
13 |
A |
0.617401 |
| AFFX-LysX-3_at |
10.8 |
A |
0.239063 |
| AFFX-PheX-5_at |
1.1 |
A |
0.953518 |
| AFFX-PheX-M_at |
3.2 |
A |
0.794268 |
| AFFX-PheX-3_at |
12.5 |
A |
0.672921 |
| AFFX-ThrX-5_at |
9 |
A |
0.749204 |
| AFFX-ThrX-M_at |
9.8 |
A |
0.470241 |
Total number of rows: 22283
Table truncated, full table size 581 Kbytes.
| Supplementary data files not provided |
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