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GEO accession:
Sample GSM94257
Query DataSets for GSM94257
Status
Public on Mar 16, 2006
Title
AMKL patient sample_AMKL084
Sample type
RNA
Source name
bone marrow or peripheral blood
Organism
Homo sapiens
Characteristics
diagnostic sample
Extracted molecule
total RNA
Extraction protocol
mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label
biotin
Label protocol
2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
AMKL diagnostic sample
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jan 30, 2006
Last update date
Mar 16, 2006
Contact name
Jean-Pierre Bourquin
E-mail(s)
jean-pierre.bourquin@kispi.unizh.ch
Phone
+41 44 266 7304
Fax
+41 44 266 7171
Organization name
University Children's Hospital Zurich
Department
Pediatric Oncology
Lab
Molecular Oncology
Street address
Steinwiesstrasse 75
City
Zurich
ZIP/Postal code
8032
Country
Switzerland
Platform ID
GPL96
Series (1)
GSE4119
Expression profiling of acute megakaryoblastic leukemia
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
141.2
P
7.54E-04
AFFX-BioB-M_at
442.4
P
2.25E-04
AFFX-BioB-3_at
183.4
P
1.47E-04
AFFX-BioC-5_at
512.5
P
7.00E-05
AFFX-BioC-3_at
419.9
P
5.20E-05
AFFX-BioDn-5_at
405.1
P
6.00E-05
AFFX-BioDn-3_at
2560.1
P
4.40E-05
AFFX-CreX-5_at
5411.9
P
4.40E-05
AFFX-CreX-3_at
9404.1
P
4.40E-05
AFFX-DapX-5_at
12.7
A
0.156732
AFFX-DapX-M_at
26.6
A
0.165861
AFFX-DapX-3_at
3.3
A
0.804734
AFFX-LysX-5_at
0.9
A
0.814869
AFFX-LysX-M_at
3.1
A
0.897835
AFFX-LysX-3_at
9.4
A
0.102165
AFFX-PheX-5_at
1.4
A
0.868639
AFFX-PheX-M_at
1.3
A
0.852061
AFFX-PheX-3_at
9.5
A
0.455413
AFFX-ThrX-5_at
3.2
A
0.470241
AFFX-ThrX-M_at
15.2
A
0.313723
Total number of rows:
22283
Table truncated, full table size
579 Kbytes
.
Supplementary data files not provided
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