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Sample GSM94241 Query DataSets for GSM94241
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL048
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 91.2 P 0.028457
AFFX-BioB-M_at 143 P 9.72E-04
AFFX-BioB-3_at 84.6 P 0.003595
AFFX-BioC-5_at 240.2 P 1.47E-04
AFFX-BioC-3_at 121.6 P 9.72E-04
AFFX-BioDn-5_at 148.5 P 3.90E-04
AFFX-BioDn-3_at 1415.5 P 4.46E-04
AFFX-CreX-5_at 2370.1 P 4.40E-05
AFFX-CreX-3_at 4147.2 P 4.40E-05
AFFX-DapX-5_at 8.1 A 0.368438
AFFX-DapX-M_at 14.3 A 0.095667
AFFX-DapX-3_at 3.6 A 0.60308
AFFX-LysX-5_at 9 A 0.52976
AFFX-LysX-M_at 2.1 A 0.834139
AFFX-LysX-3_at 13.9 A 0.239063
AFFX-PheX-5_at 2.2 A 0.824672
AFFX-PheX-M_at 2.5 A 0.834139
AFFX-PheX-3_at 15.1 A 0.574038
AFFX-ThrX-5_at 11.9 A 0.52976
AFFX-ThrX-M_at 1.3 A 0.904333

Total number of rows: 22283

Table truncated, full table size 581 Kbytes.

Supplementary data files not provided

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