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GEO accession:
Sample GSM94241
Query DataSets for GSM94241
Status
Public on Mar 16, 2006
Title
AMKL patient sample_AMKL048
Sample type
RNA
Source name
bone marrow or peripheral blood
Organism
Homo sapiens
Characteristics
diagnostic sample
Extracted molecule
total RNA
Extraction protocol
mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label
biotin
Label protocol
2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
AMKL diagnostic sample
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jan 30, 2006
Last update date
Mar 16, 2006
Contact name
Jean-Pierre Bourquin
E-mail(s)
jean-pierre.bourquin@kispi.unizh.ch
Phone
+41 44 266 7304
Fax
+41 44 266 7171
Organization name
University Children's Hospital Zurich
Department
Pediatric Oncology
Lab
Molecular Oncology
Street address
Steinwiesstrasse 75
City
Zurich
ZIP/Postal code
8032
Country
Switzerland
Platform ID
GPL96
Series (1)
GSE4119
Expression profiling of acute megakaryoblastic leukemia
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
91.2
P
0.028457
AFFX-BioB-M_at
143
P
9.72E-04
AFFX-BioB-3_at
84.6
P
0.003595
AFFX-BioC-5_at
240.2
P
1.47E-04
AFFX-BioC-3_at
121.6
P
9.72E-04
AFFX-BioDn-5_at
148.5
P
3.90E-04
AFFX-BioDn-3_at
1415.5
P
4.46E-04
AFFX-CreX-5_at
2370.1
P
4.40E-05
AFFX-CreX-3_at
4147.2
P
4.40E-05
AFFX-DapX-5_at
8.1
A
0.368438
AFFX-DapX-M_at
14.3
A
0.095667
AFFX-DapX-3_at
3.6
A
0.60308
AFFX-LysX-5_at
9
A
0.52976
AFFX-LysX-M_at
2.1
A
0.834139
AFFX-LysX-3_at
13.9
A
0.239063
AFFX-PheX-5_at
2.2
A
0.824672
AFFX-PheX-M_at
2.5
A
0.834139
AFFX-PheX-3_at
15.1
A
0.574038
AFFX-ThrX-5_at
11.9
A
0.52976
AFFX-ThrX-M_at
1.3
A
0.904333
Total number of rows:
22283
Table truncated, full table size
581 Kbytes
.
Supplementary data files not provided
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