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Sample GSM94232 Query DataSets for GSM94232
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL038
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 139 P 0.001248
AFFX-BioB-M_at 329 P 8.10E-05
AFFX-BioB-3_at 207.6 P 2.25E-04
AFFX-BioC-5_at 399.2 P 1.10E-04
AFFX-BioC-3_at 354.8 P 5.20E-05
AFFX-BioDn-5_at 374.5 P 7.00E-05
AFFX-BioDn-3_at 2248.2 P 5.20E-05
AFFX-CreX-5_at 3976.6 P 4.40E-05
AFFX-CreX-3_at 6081.9 P 4.40E-05
AFFX-DapX-5_at 12.9 A 0.116113
AFFX-DapX-M_at 15.9 A 0.078002
AFFX-DapX-3_at 1.9 A 0.897835
AFFX-LysX-5_at 2.8 A 0.617401
AFFX-LysX-M_at 15.4 A 0.41138
AFFX-LysX-3_at 2.8 A 0.574038
AFFX-PheX-5_at 1.4 A 0.883887
AFFX-PheX-M_at 2.5 A 0.617401
AFFX-PheX-3_at 23.2 A 0.39692
AFFX-ThrX-5_at 2.7 A 0.834139
AFFX-ThrX-M_at 3.3 A 0.574038

Total number of rows: 22283

Table truncated, full table size 577 Kbytes.

Supplementary data files not provided

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