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Sample GSM94223 Query DataSets for GSM94223
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL026
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 113 P 0.001796
AFFX-BioB-M_at 242.9 P 1.27E-04
AFFX-BioB-3_at 147 P 1.47E-04
AFFX-BioC-5_at 396.3 P 1.47E-04
AFFX-BioC-3_at 257.1 P 7.00E-05
AFFX-BioDn-5_at 291 P 6.00E-05
AFFX-BioDn-3_at 1896.9 P 8.10E-05
AFFX-CreX-5_at 3503.8 P 4.40E-05
AFFX-CreX-3_at 5638.8 P 4.40E-05
AFFX-DapX-5_at 10.1 A 0.195266
AFFX-DapX-M_at 2.5 A 0.440646
AFFX-DapX-3_at 1.5 A 0.876428
AFFX-LysX-5_at 5.5 A 0.52976
AFFX-LysX-M_at 4 A 0.760937
AFFX-LysX-3_at 3 A 0.455413
AFFX-PheX-5_at 1.6 A 0.868639
AFFX-PheX-M_at 2.2 A 0.860518
AFFX-PheX-3_at 5.8 A 0.60308
AFFX-ThrX-5_at 10.4 A 0.455413
AFFX-ThrX-M_at 7.3 A 0.645547

Total number of rows: 22283

Table truncated, full table size 579 Kbytes.

Supplementary data files not provided

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