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Sample GSM94222 Query DataSets for GSM94222
Status Public on Mar 16, 2006
Title AMKL patient sample_AMKL025
Sample type RNA
Source name bone marrow or peripheral blood
Organism Homo sapiens
Characteristics diagnostic sample
Extracted molecule total RNA
Extraction protocol mononuclear cells after Ficol gradient, RNA extract with TRIZOL and promega SV column
Label biotin
Label protocol 2-10 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description AMKL diagnostic sample
Data processing Affymetrix Microarray Suite version 5.0
Submission date Jan 30, 2006
Last update date Mar 16, 2006
Contact name Jean-Pierre Bourquin
Phone +41 44 266 7304
Fax +41 44 266 7171
Organization name University Children's Hospital Zurich
Department Pediatric Oncology
Lab Molecular Oncology
Street address Steinwiesstrasse 75
City Zurich
ZIP/Postal code 8032
Country Switzerland
Platform ID GPL96
Series (1)
GSE4119 Expression profiling of acute megakaryoblastic leukemia

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 180.8 P 0.002275
AFFX-BioB-M_at 297.9 P 1.10E-04
AFFX-BioB-3_at 174.5 P 4.40E-05
AFFX-BioC-5_at 462.8 P 9.50E-05
AFFX-BioC-3_at 418.5 P 7.00E-05
AFFX-BioDn-5_at 411.2 P 8.10E-05
AFFX-BioDn-3_at 2578.6 P 6.00E-05
AFFX-CreX-5_at 4450.1 P 4.40E-05
AFFX-CreX-3_at 6927.7 P 4.40E-05
AFFX-DapX-5_at 11.2 A 0.139482
AFFX-DapX-M_at 10.1 A 0.340661
AFFX-DapX-3_at 1.8 A 0.921998
AFFX-LysX-5_at 4.3 A 0.60308
AFFX-LysX-M_at 5.1 A 0.794268
AFFX-LysX-3_at 6.9 A 0.205732
AFFX-PheX-5_at 1.5 A 0.852061
AFFX-PheX-M_at 2.3 A 0.921998
AFFX-PheX-3_at 9.7 A 0.544587
AFFX-ThrX-5_at 2.4 A 0.834139
AFFX-ThrX-M_at 2.5 A 0.712257

Total number of rows: 22283

Table truncated, full table size 580 Kbytes.

Supplementary data files not provided

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