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Sample GSM935332 Query DataSets for GSM935332
Status Public on May 22, 2012
Title Stanford_ChipSeq_GM12878_Rad21_IgG-rab
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: GM12878
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: Rad21
antibody antibodydescription: Rabbit polyclonal. Antibody Target: RAD21
antibody targetdescription: Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14
antibody vendorname: Abcam
antibody vendorid: ab992
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: wgEncodeEH000771
labversion: remapped from hg18
replicate: 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX150412
BioSample SAMN01000873
Named Annotation GSM935332_hg19_wgEncodeSydhTfbsGm12878Rad21IggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM935332_hg19_wgEncodeSydhTfbsGm12878Rad21IggrabPk.narrowPeak.gz 497.4 Kb (ftp)(http) NARROWPEAK
GSM935332_hg19_wgEncodeSydhTfbsGm12878Rad21IggrabSig.bigWig 433.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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