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Sample GSM935328 Query DataSets for GSM935328
Status Public on May 22, 2012
Title Stanford_ChipSeq_HeLa-S3_JunD_IgG-rab
Sample type SRA
Source name HeLa-S3
Organism Homo sapiens
Characteristics lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HeLa-S3
cell organism: human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: JunD
antibody antibodydescription: rabbit polyclonal IgG. Antibody Target: JunD
antibody targetdescription: The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-74
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: wgEncodeEH000744
labversion: remapped from hg18
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX150408
BioSample SAMN01000868
Named Annotation GSM935328_hg19_wgEncodeSydhTfbsHelas3JundIggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM935328_hg19_wgEncodeSydhTfbsHelas3JundIggrabPk.narrowPeak.gz 424.2 Kb (ftp)(http) NARROWPEAK
GSM935328_hg19_wgEncodeSydhTfbsHelas3JundIggrabSig.bigWig 404.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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