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Sample GSM935320 Query DataSets for GSM935320
Status Public on May 22, 2012
Title Yale_ChipSeq_HeLa-S3_c-Myc_std
Sample type SRA
Source name HeLa-S3
Organism Homo sapiens
Characteristics lab: Yale
lab description: Snyder - Yale University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HeLa-S3
cell organism: human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: c-Myc
antibody antibodydescription: rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc
antibody targetdescription: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-764
control: std
control description: Standard input signal for most experiments.
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000612
labversion: Contains incomplete fastq files
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX150400
BioSample SAMN01000860
Named Annotation GSM935320_hg19_wgEncodeSydhTfbsHelas3CmycStdSig.bigWig

Supplementary file Size Download File type/resource
GSM935320_hg19_wgEncodeSydhTfbsHelas3CmycStdPk.narrowPeak.gz 166.1 Kb (ftp)(http) NARROWPEAK
GSM935320_hg19_wgEncodeSydhTfbsHelas3CmycStdSig.bigWig 327.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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