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Sample GSM935316 Query DataSets for GSM935316
Status Public on May 22, 2012
Title Yale_ChipSeq_GM12878_Pol3_std
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics lab: Yale
lab description: Snyder - Yale University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: GM12878
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: Pol3
antibody antibodydescription: mouse monoclonal IgG1. Antibody Target: POL3
antibody targetdescription: RNA Polymerase III
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-21754
control: std
control description: Standard input signal for most experiments.
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000625
labversion: Incomplete fastq due to Illumina pipeline version
replicate: 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX150396
BioSample SAMN01000856
Named Annotation GSM935316_hg19_wgEncodeSydhTfbsGm12878Pol3StdSig.bigWig

Supplementary file Size Download File type/resource
GSM935316_hg19_wgEncodeSydhTfbsGm12878Pol3StdPk.narrowPeak.gz 2.9 Kb (ftp)(http) NARROWPEAK
GSM935316_hg19_wgEncodeSydhTfbsGm12878Pol3StdSig.bigWig 263.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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