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Sample GSM935290 Query DataSets for GSM935290
Status Public on May 22, 2012
Title Stanford_ChipSeq_HeLa-S3_MafK_(ab50322)_IgG-rab
Sample type SRA
Source name HeLa-S3
Organism Homo sapiens
Characteristics lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: HeLa-S3
cell organism: human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
antibody: MafK_(ab50322)
antibody antibodydescription: Rabbit polyclonal. Raised against synthetic peptide: TTNPKPNKALKVKKEA conjugated to KLH by a C-terminal Cysteine residue linker, corresponding to amino acids 2-17 of Human MAFK. Antibody Target: MafK
antibody targetdescription: NFE2 DNA-binding activity consists of a heterodimer containing an 18-kD Maf protein (MafF, MafG, or MafK) and p45. Both subunits are members of the activator protein-1 superfamily of basic leucine zipper (bZIP)proteins. Since they lack a putative transactivation domain, small Mafs behave as transcriptional repressors when they dimerize among themselves. They serve as transcriptional activators by dimerizing with other (usually larger) bZip proteins and recruiting them to specific DNA-binding sites.
antibody vendorname: Abcam
antibody vendorid: ab50322
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: wgEncodeEH000744
replicate: 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date May 22, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE31477 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX150370
BioSample SAMN01000830
Named Annotation GSM935290_hg19_wgEncodeSydhTfbsHelas3MafkIggrabSig.bigWig

Supplementary file Size Download File type/resource
GSM935290_hg19_wgEncodeSydhTfbsHelas3MafkIggrabPk.narrowPeak.gz 964.5 Kb (ftp)(http) NARROWPEAK
GSM935290_hg19_wgEncodeSydhTfbsHelas3MafkIggrabSig.bigWig 394.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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