|
| Status |
Public on Jul 27, 2012 |
| Title |
Primary medulloblastoma sample_MDT-MB-138 [SNP] |
| Sample type |
genomic |
| |
|
| Source name |
Primary medulloblastoma
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Primary medulloblastoma
age: 3.0
gender: M
histological subtype: Classic
subgroup: SHH
|
| Treatment protocol |
N/A
|
| Growth protocol |
N/A
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
High molecular weight genomic DNA was extracted from primary tissue and cell lines using either the standard SDS/Proteinase K method or Qiagen DNEasy Blood and Tissue Kits.
|
| Label |
Biotin
|
| Label protocol |
As directed by the manufacturer (Affymetrix)
|
| |
|
| Hybridization protocol |
As directed by the manufacturer (Affymetrix)
|
| Scan protocol |
As directed by the manufacturer (Affymetrix)
|
| Description |
MDT-MB-138
|
| Data processing |
SNP genotyping was performed using the birdseed algorithm (v2) available in Affymetrix Genotyping Console 4.0. For copy number analysis, CEL files were quantile normalized and signal intensities estimated using the MBEI method in dChip.
|
| |
|
| Submission date |
Apr 18, 2012 |
| Last update date |
Jul 27, 2012 |
| Contact name |
Paul A. Northcott |
| E-mail(s) |
panorthcott@gmail.com
|
| Organization name |
German Cancer Research Center (DKFZ)
|
| Street address |
Im Neuenheimer Feld 280
|
| City |
HEIDELBERG |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platform ID |
GPL6801 |
| Series (2) |
| GSE37384 |
Subgroup specific somatic copy number aberrations in the medulloblastoma genome [gDNA] |
| GSE37385 |
Subgroup specific somatic copy number aberrations in the medulloblastoma genome |
|
