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Sample GSM907009 Query DataSets for GSM907009
Status Public on Nov 12, 2012
Title Salivary duct carcinoma (SDC) of parotid gland No.2
Sample type RNA
 
Channel 1
Source name SDC2N
Organism Homo sapiens
Characteristics tissue type: Non-tumorous tissue
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Cy3
Label protocol Agilent two-color Low RNA Input Linear Amplification Kit labeling protocol
 
Channel 2
Source name SDC2T
Organism Homo sapiens
Characteristics tissue type: Tumor tissue
age (yrs): 62
gender: male
histlogical type: salivary duct carcinoma
Stage: IVC
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Cy5
Label protocol Agilent two-color Low RNA Input Linear Amplification Kit labeling protocol
 
 
Hybridization protocol Agilent two-color gene expression hyb/wash protocol
Scan protocol Microarray slides were scanned in an Agilent Technologies G2505B Microarray Scanner at 5 micron resolution. Images were quantified using Agilent Feature Extraction software version 9.5.3
Description SDC2
Data processing LOWESS normalized, background subtracted VALUE data obtained from log10 of processed Red signal/processed Green signal. Agilent software was used.
 
Submission date Mar 30, 2012
Last update date Nov 12, 2012
Contact name Naohiko Seki
E-mail(s) naoseki@faculty.chiba-u.jp
Phone 81-43-226-2971
Fax 81-43-227-3442
Organization name Chiba University
Department School of Medicine
Lab Functional Genomics
Street address 1-8-1 Inohana,Chuo-ku
City Chiba
State/province Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platform ID GPL13607
Series (1)
GSE36951 Gene expression profiles of head and neck squamous cell carcinoma and renal cell carcinoma

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 -5.227184807e-002
2 -3.891083018e-001
3 0.000000000e+000
4 1.341312482e-002
5 -1.109606621e-001
6 -7.858812154e-002
7 2.877979405e-003
8 2.879545486e-002
9 2.354009097e-001
10 -1.251551101e-001
11 5.292951546e-003
12 -1.076283149e-001
13 3.366696284e-002
14 1.189633939e-001
15 -1.580820869e-001
16 0.000000000e+000
17 -2.163663914e-001
18 0.000000000e+000
19 9.133754637e-001
20 -9.520564638e-002

Total number of rows: 62976

Table truncated, full table size 1430 Kbytes.




Supplementary file Size Download File type/resource
GSM907009_A1-SDC2T_SDC2N.txt.gz 21.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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