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Sample GSM907005 Query DataSets for GSM907005
Status Public on Nov 12, 2012
Title Hypopharyngeal squamous cell carcinoma (HSCC) No.32
Sample type RNA
 
Channel 1
Source name HSCC32N
Organism Homo sapiens
Characteristics tissue type: Non-tumorous tissue
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Cy3
Label protocol Agilent two-color Low RNA Input Linear Amplification Kit labeling protocol
 
Channel 2
Source name HSCC32T
Organism Homo sapiens
Characteristics tissue type: Tumor tissue
age (yrs): 52
gender: male
histlogical type: moderately differentiated squamous cell carcinoma
Stage: IVC
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Cy5
Label protocol Agilent two-color Low RNA Input Linear Amplification Kit labeling protocol
 
 
Hybridization protocol Agilent two-color gene expression hyb/wash protocol
Scan protocol Microarray slides were scanned in an Agilent Technologies G2505B Microarray Scanner at 5 micron resolution. Images were quantified using Agilent Feature Extraction software version 9.5.3
Description HSCC32
Data processing LOWESS normalized, background subtracted VALUE data obtained from log10 of processed Red signal/processed Green signal. Agilent software was used.
 
Submission date Mar 30, 2012
Last update date Nov 12, 2012
Contact name Naohiko Seki
E-mail(s) naoseki@faculty.chiba-u.jp
Phone 81-43-226-2971
Fax 81-43-227-3442
Organization name Chiba University
Department School of Medicine
Lab Functional Genomics
Street address 1-8-1 Inohana,Chuo-ku
City Chiba
State/province Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platform ID GPL13607
Series (1)
GSE36951 Gene expression profiles of head and neck squamous cell carcinoma and renal cell carcinoma

Data table header descriptions
ID_REF
VALUE normalized log10 ratio Cy5/Cy3

Data table
ID_REF VALUE
1 -2.276413964e-002
2 1.813176950e-001
3 0.000000000e+000
4 -9.363282328e-002
5 4.666237230e-001
6 2.481953842e-001
7 -9.270451038e-002
8 3.377929067e-002
9 0.000000000e+000
10 6.019030497e-002
11 0.000000000e+000
12 -7.690372119e-002
13 -1.383511963e-001
14 -1.707083855e-001
15 5.545213093e-001
16 0.000000000e+000
17 3.201883178e-001
18 0.000000000e+000
19 1.210724729e-001
20 -1.432346813e-001

Total number of rows: 62976

Table truncated, full table size 1424 Kbytes.




Supplementary file Size Download File type/resource
GSM907005_A13-H32-T_H32-N.txt.gz 21.2 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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