GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM900194

Query DataSets for GSM900194

Status

Public on Apr 02, 2012

Title

CSHL_RnaSeq_Kidney_adult-8wks (superseded by GSE90179)

Sample type

SRA

Source name

Kidney

Organism

Mus musculus

Characteristics

lab: CSHL-m
lab description: Gingeras - Cold Spring Harbor Laboratory
datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
cell: Kidney
cell organism: mouse
cell description: Kidney
cell sex: U
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
biorep: 17AWC
labexpid: LID20872
readtype: 2x76D
readtype description: Paired 76 nt directed reads
replicate: 1
spikeinpool: Nist14
strain: C57BL/6J
strain description: C57 black 6, the most common inbred strain of laboratory mouse

Biomaterial provider

Stam lab

Extracted molecule

polyA RNA

Extraction protocol

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCshlLongRnaSeq

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

cDNA

Instrument model

Illumina Genome Analyzer II

Description

****************************
GSM900194 record metadata submitted on Mar 23 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90179
****************************

Data processing

http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeCshlLongRnaSeq

Submission date

Mar 23, 2012

Last update date

Feb 26, 2020

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL9250

Series (3)

GSE36025	Long RNA-seq from ENCODE/Cold Spring Harbor Lab
GSE49417	The conserved organization of the human and mouse transcriptomes
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome

Relations

Reanalyzed by

Superseded by

Reanalyzed by

SRA

BioSample

Named Annotation

GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksMinusRawRep1.bigWig

Named Annotation

GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksMinusRawRep2.bigWig

Named Annotation

GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksPlusRawRep1.bigWig

Named Annotation

GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksPlusRawRep2.bigWig

Supplementary file	Size	Download	File type/resource
GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksContigs.bedRnaElements.gz	12.7 Mb	(ftp)(http)	BEDRNAELEMENTS
GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksJunctions.bedRnaElements.gz	7.0 Mb	(ftp)(http)	BEDRNAELEMENTS
GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksMinusRawRep1.bigWig	125.7 Mb	(ftp)(http)	BIGWIG
GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksMinusRawRep2.bigWig	126.0 Mb	(ftp)(http)	BIGWIG
GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksPlusRawRep1.bigWig	127.7 Mb	(ftp)(http)	BIGWIG
GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksPlusRawRep2.bigWig	127.8 Mb	(ftp)(http)	BIGWIG
GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksSpikeinsRep1V2.bam	120.7 Mb	(ftp)(http)	BAM
GSM900194_mm9_wgEncodeCshlLongRnaSeqKidneyAdult8wksSpikeinsRep2V2.bam	216.0 Mb	(ftp)(http)	BAM
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file