GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Series GSE90179

Query DataSets for GSE90179

Status

Public on Dec 07, 2016

Title

polyA mRNA RNA-seq from kidney (ENCSR000BYR)

Project

Mouse ENCODE

Organism

Mus musculus

Experiment type

Expression profiling by high throughput sequencing

Summary

The libraries contained in this experiment come from adult 8 week kidney tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR000BYR/

Citation(s)

22955616

BioProject

PRJNA66167

Submission date

Nov 22, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL11002

Illumina Genome Analyzer IIx (Mus musculus)

Samples (2)

GSM2400060	polyA mRNA RNA-seq from kidney (ENCLB555AZK)
GSM2400061	polyA mRNA RNA-seq from kidney (ENCLB555AYS)

Relations

Supersedes

GSM900194

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE90179_ENCFF001IWS_contigs_mm9.bigBed	21.1 Mb	(ftp)(http)	BIGBED
GSE90179_ENCFF001IXN_splice_junctions_mm9.bigBed	8.0 Mb	(ftp)(http)	BIGBED
GSE90179_ENCFF632YII_splice_junctions_mm9.bed.gz	7.1 Mb	(ftp)(http)	BED
GSE90179_ENCFF832XJE_contigs_mm9.bed.gz	13.0 Mb	(ftp)(http)	BED
GSE90179_RAW.tar	1.0 Gb	(http)(custom)	TAR (of BIGWIG, TSV, TXT)
SRA Run Selector
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file