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Sample GSM852303 Query DataSets for GSM852303
Status Public on Dec 22, 2011
Title NA_CD3_1Y_4
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: mixed
age: 1
disease state: NORM
treatment: CD3
pool id: J
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 2.163142999
cg00000108 4.154014854
cg00000109 2.958455258
cg00000165 -1.5691669
cg00000236 2.623721006
cg00000289 1.379864392
cg00000292 3.322356951
cg00000321 -1.088965833
cg00000363 -0.741673439
cg00000622 -5.295938649
cg00000658 2.320064886
cg00000714 -0.870610045
cg00000721 3.560008311
cg00000734 -3.034753033
cg00000769 -4.506091218
cg00000807 3.376450968
cg00000884 2.767207298
cg00000905 -2.748553796
cg00000924 0.035745759
cg00000948 2.867511936

Total number of rows: 462176

Table truncated, full table size 10531 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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