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Sample GSM852292 Query DataSets for GSM852292
Status Public on Dec 22, 2011
Title NA_CD3_1Y_2
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: mixed
age: 1
disease state: NORM
treatment: CD3
pool id: E
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.700277289
cg00000108 3.796330704
cg00000109 3.449893165
cg00000165 -0.994589448
cg00000236 2.935028897
cg00000289 1.44611225
cg00000292 3.413395144
cg00000321 -1.217784388
cg00000363 -0.257676871
cg00000622 -6.044089854
cg00000658 2.21595975
cg00000714 -0.840515812
cg00000721 3.265571432
cg00000734 -2.906085879
cg00000769 -4.306950002
cg00000807 3.258516667
cg00000884 2.50681251
cg00000905 -2.413741495
cg00000924 -0.046583668
cg00000948 3.440815793

Total number of rows: 462176

Table truncated, full table size 10530 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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