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Sample GSM847573 Query DataSets for GSM847573
Status Public on Jan 18, 2012
Title PREC_2
Sample type genomic
Source name PrEC cells
Organism Homo sapiens
Characteristics tissue: prostate
cell line: PrEC
Treatment protocol Native DNA was used
Growth protocol 37 deg C with 5% CO2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted using the QIAamp Mini Kit (Qiagen) following manufacturers instructions.
Label Cy5 and Cy3
Label protocol According to manufacturer's protocol.
Hybridization protocol According to manufacturer's protocol.
Scan protocol According to manufacturer's protocol.
Description Sample name: 6264509024_R05C02
Data processing R/Bioconductor 'minfi' package, with default parameters {RG.raw <- read.450k.exp(base = slide.folder, targets = files.table); methyl.norm <- preprocessIllumina(RG.raw, bg.correct = TRUE, normalize = controls); beta.table <- getBeta(methyl.norm)}, to generate beta values
Submission date Dec 12, 2011
Last update date Jan 18, 2012
Contact name Mark Robinson
Organization name University of Zuerich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zuerich
ZIP/Postal code 8057
Country Switzerland
Platform ID GPL13534
Series (2)
GSE34340 Bisulphite sequencing of native LNCaP and PrEC DNA [methylation array]
GSE34403 Bisulphite-sequencing of chromatin immunoprecipitated DNA directly informs methylation status of histone-modified DNA

Data table header descriptions
VALUE Beta values

Data table
cg00050873 0.82305069
cg00212031 0.014167651
cg00213748 0.967741935
cg00214611 0.019405941
cg00455876 0.956552538
cg01707559 0.01836801
cg02004872 0.004532344
cg02011394 0.961690749
cg02050847 0.981770523
cg02233190 0.010109098
cg02494853 0.011594361
cg02839557 0
cg02842889 0.001692488
cg03052502 0.996414602
cg03155755 0.930159969
cg03244189 0.040193335
cg03443143 0.898609612
cg03683899 0.001160261
cg03695421 0.78376544
cg03706273 0.02542874

Total number of rows: 485577

Table truncated, full table size 10793 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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