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Series GSE34340 Query DataSets for GSE34340
Status Public on Jan 18, 2012
Title Bisulphite sequencing of native LNCaP and PrEC DNA [methylation array]
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary As a reference dataset to compare BisChIP-seq and other methylated DNA capture experiments against, we have collected Illumina 450k to profile CpG methylation status on native DNA.
Overall design Illumina 450k array for LNCaP and PrEC cell lines
Contributor(s) Robinson MD
Citation(s) 22466171
Submission date Dec 12, 2011
Last update date Mar 22, 2019
Contact name Mark Robinson
Organization name University of Zuerich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zuerich
ZIP/Postal code 8057
Country Switzerland
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (6)
GSM847569 LNCAP_1
GSM847570 LNCAP_2
GSM847571 LNCAP_3
This SubSeries is part of SuperSeries:
GSE34403 Bisulphite-sequencing of chromatin immunoprecipitated DNA directly informs methylation status of histone-modified DNA
BioProject PRJNA156409

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34340_RAW.tar 183.1 Mb (http)(custom) TAR
GSE34340_signals.txt.gz 11.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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