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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 17, 2024 |
| Title |
w1118_F_D45_Gut_rep2 |
| Sample type |
SRA |
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| Source name |
Female, D45, Whole guts
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| Organism |
Drosophila melanogaster |
| Characteristics |
tissue: Whole Gut
genotype: w1118
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| Growth protocol |
25C normal diet
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| Extracted molecule |
total RNA |
| Extraction protocol |
Flies or tissues are homogenized in Trizol, total RNA is then extracted with standard protocol.
Standard Illumina library construction
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Mapped to Dm6.43, TPM obtained with Slamon
Assembly: Dm6.43
Supplementary files format and content: Excel file, first two colomns are FBgn and Gene_Symbol, followed by TPM for sample columns.
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| Submission date |
Mar 28, 2024 |
| Last update date |
Apr 17, 2024 |
| Contact name |
Lei Zhou |
| E-mail(s) |
leizhou@ufl.edu
|
| Phone |
3522738169
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| Organization name |
University of Florida
|
| Department |
Molecular Genetics and Microbiology
|
| Lab |
Zhou
|
| Street address |
PO Box 100266
|
| City |
Gainesville |
| State/province |
FL |
| ZIP/Postal code |
32610 |
| Country |
USA |
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| Platform ID |
GPL19132 |
| Series (1) |
| GSE262759 |
Shared Transcriptomic Signatures of Inflammaging Among Diverse Strains of Drosophila melanogaster |
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| Relations |
| BioSample |
SAMN40648013 |
| SRA |
SRX24093821 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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